| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,033,984 – 12,034,068 |
| Length | 84 |
| Max. P | 0.523339 |
| Location | 12,033,984 – 12,034,068 |
|---|---|
| Length | 84 |
| Sequences | 7 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Shannon entropy | 0.48765 |
| G+C content | 0.42632 |
| Mean single sequence MFE | -18.09 |
| Consensus MFE | -8.66 |
| Energy contribution | -9.75 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12033984 84 - 24543557 UUUAGAGCACUUCACAGUUUCCCAAUGCCUGUGACGUGAAGUGGUCUAUAACUUGCUCACUUACACCAUCUGAACAUCUGAAUA ((((((.(((.((((((...........)))))).)))(((((..(........)..)))))..............)))))).. ( -18.40, z-score = -1.35, R) >droSim1.chr3L 11403551 84 - 22553184 UUUAGAGCACUUCACAGUUUCCCAAUGCCUGUGACGUGAAGUGGUCUAUAACUUGCUCACUUACACCAACUGAACAUCUGAAUA ((((((.(((.((((((...........)))))).)))(((((..(........)..)))))..............)))))).. ( -18.40, z-score = -1.40, R) >droSec1.super_0 4219765 84 - 21120651 UUUAGAGGACUUCACAGUUUCCCAAUGAGUGUGACGUGAAGUGGUCUAUAACUUGCUCACUUACACCAUCCGAACAUCUGAAUA (((((((((..(((((.((.......)).))))).((((((((..(........)..))))).)))..))).....)))))).. ( -18.50, z-score = -0.58, R) >droYak2.chr3L 12080451 84 - 24197627 UUUAGAGCACUUCACAGUUUCCCAAUGCUUAUGACGUGAAGUGCUCUAUAACUUGCUCACUUACACCAUCUGAACAUCUGAAUA ..(((((((((((((.(((.............)))))))))))))))).................................... ( -21.72, z-score = -3.83, R) >droEre2.scaffold_4784 12023061 84 - 25762168 UUUAGAGCACUUCACAGUUUCCCAAUGCCUUUGACGCGAAGUGGUCUAUAACUUGCUCACUUACACCAUCUGAACAUCCGAAUA ..((((.((((((.(.(((.............)))).)))))).)))).................................... ( -13.32, z-score = -0.54, R) >dp4.chrXR_group8 9070750 75 - 9212921 UGUAGGGCACUCUGUCAUUUCACAAUUCUUGUUGCCUGAAGUGGUGUUCUAUAACACCUUCUGCACCACUCGAUC--------- ((((((((((.....(((((((((((....))))..)))))))))))))))))......................--------- ( -16.70, z-score = -0.93, R) >droPer1.super_50 420102 74 + 557249 UGUAGGGCACUCUGUCAUUUCACAAUUCUUGUGGCCUGAAGUGGUGUUCUAUAACACCUUCUGCACCACUCGAU---------- (((((((((((...(((..(((((.....)))))..)))...))))))))))).....................---------- ( -19.60, z-score = -1.47, R) >consensus UUUAGAGCACUUCACAGUUUCCCAAUGCCUGUGACGUGAAGUGGUCUAUAACUUGCUCACUUACACCAUCUGAACAUCUGAAUA ..((((.((((((((.(((.............))))))))))).)))).................................... ( -8.66 = -9.75 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:13 2011