| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,024,262 – 12,024,355 |
| Length | 93 |
| Max. P | 0.909657 |
| Location | 12,024,262 – 12,024,355 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 81.62 |
| Shannon entropy | 0.31542 |
| G+C content | 0.43993 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -14.98 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12024262 93 - 24543557 -AUGCUAUAUGCCCCUGAUUCCCAUGACCAAAAUAAAUCGUAUGCCUC--GGUAAAACUGGAAUUCGAUGGCCUUUUACUAUUGAUAGCCCCAAAA--- -..(((((........((((((.((((..........)))).(((...--.))).....))))))((((((.......))))))))))).......--- ( -13.70, z-score = -0.08, R) >droEre2.scaffold_4784 12012164 96 - 25762168 CAUGCUAUAUGACCAUGAUU-CCAAGACUAAAAGAAGUCGUGUGCCAA--GGCAAGACUUGAAUUCGAUGGCUUUUUGCCAUCGAUAGCCCCAAAACCU ...((((.............-.............(((((...(((...--.))).)))))....((((((((.....)))))))))))).......... ( -27.00, z-score = -3.48, R) >droYak2.chr3L 12070551 96 - 24197627 -AUGCUGUAUGCCCAUGAUUCCCAUGACUUAAAUGAGUCGUGUGCCAA--GGCAAGACUCGAAUUCGAUGGCUUUUUGCCAUUGAUAGCCCCAAAACCU -..(((((.....((((.....)))).......((((((...(((...--.))).))))))....(((((((.....)))))))))))).......... ( -29.80, z-score = -3.96, R) >droSec1.super_0 4210227 86 - 21120651 --------AUGCCAU--AUGCCCAUGACCAAAAUGAGUCGUAUGCCCCGUGGCAAGACUGGAAUUCGAUGGCCUUUUACUAUUGAUAGCCCCAAAA--- --------.((((((--..((..((((((.....).)))))..))...)))))).....((...(((((((.......)))))))...))......--- ( -22.00, z-score = -2.13, R) >droSim1.chr3L 11393970 93 - 22553184 -AUGCUAUAUGCCCAUGAUUCCCAUGACCAAAAUAAGUCGUAUGCCUC--GGCAAGACUGGAAUUCGAUGGCCUUUUACUAUUGAUAGCCCCAAAA--- -..(((((........((((((.(((((........))))).(((...--.))).....))))))((((((.......))))))))))).......--- ( -19.70, z-score = -1.17, R) >consensus _AUGCUAUAUGCCCAUGAUUCCCAUGACCAAAAUAAGUCGUAUGCCAC__GGCAAGACUGGAAUUCGAUGGCCUUUUACUAUUGAUAGCCCCAAAA___ ...((((............................((((...((((....)))).)))).....(((((((.......))))))))))).......... (-14.98 = -15.50 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:13 2011