| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,020,393 – 12,020,504 |
| Length | 111 |
| Max. P | 0.729255 |
| Location | 12,020,393 – 12,020,504 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 131 |
| Reading direction | reverse |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.43131 |
| G+C content | 0.43548 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -14.09 |
| Energy contribution | -14.51 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12020393 111 - 24543557 CCCGAUGACUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUUUGGCAGG-AAAAACUCUUUCUCAAGGGCCACAUACA-----------------UAUGUGUGCCACUUUUUAGC--CGUUUUUUU ...(((((((...((.....))..))))))).................(((.((-(((.....))))).(((((((((((...-----------------.))))).))).)))....))--)........ ( -26.20, z-score = -2.06, R) >droAna3.scaffold_13337 11398614 96 + 23293914 CCCAGUGACUUCUUGGCCUAAAACAACAACCUUUAACCCAUUGAGAAAAUCUAGAAAAACUUUUUCCCUAAGGGCCAUG---------------------CAUGUGUGCCACUUUUU-------------- ...((((......((((((...........(((.........)))........((((.....)))).....)))))).(---------------------((....)))))))....-------------- ( -13.90, z-score = 0.59, R) >droEre2.scaffold_4784 12008015 119 - 25762168 CCCGAUGCCUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUGUGGCAGG-AAAAACUCUUUCUCAAGGGCCACAUACAUAAAUGCA---------UAUGUGUGCCACUUUUCGGC--CGACUUUUU ..((..(((((((((..((((((((((((....))))....)).))))))))))-))............((((((((((((..........---------)))))).))).)))...)))--))....... ( -30.90, z-score = -1.95, R) >droYak2.chr3L 12066555 122 - 24197627 CGCGAUGACUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUUUGGCAGGAAAAAACUCUUUCUCAAGGGCCACAUACAUAAAUGCA---------UAUGUGUGCCACUUUUCAGCCGCGACUUCUU ((((((((((...((.....))..))))))).................(((.(((((......))))).((((((((((((..........---------)))))).))).)))....))))))....... ( -30.70, z-score = -2.05, R) >droSec1.super_0 4206315 123 - 21120651 CCCGAUGACUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUUUGUCAGG-AAAAACUCUUUCUCAAGGGCCACAUACGUAGCCAUAUGCA-----UAUGUGUGCCACUUUUCAGC--CGACUUUUU ..((.(((.((((((((...(((..((((....))))...))).....))))))-))............((((((((((((.(((......))).-----)))))).))).))).)))..--))....... ( -30.20, z-score = -2.46, R) >droSim1.chr3L 11390139 128 - 22553184 CCCGAUGACUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUUUGGCAGG-AAAAACUCUUUCUCAAGGGCCACAAACAUAUAUAUAUGCAUAUGUUAUGUGUGCCACUUUUCAGC--CGACUUUUU ...(((((((...((.....))..)))))))...............(((((.((-(((.....))))).(((((((((((((((((........))))))).)))).))).)))....))--)))...... ( -31.90, z-score = -2.73, R) >consensus CCCGAUGACUUCUUGACCCACAUCAGUCAUCUUUGACCCAAUGCAUUUGGCAGG_AAAAACUCUUUCUCAAGGGCCACAUACAUA_AU__A_________UAUGUGUGCCACUUUUCAGC__CGACUUUUU ...........(((((.........((((....))))....(((.....)))...............)))))(((((((((...................)))))).)))..................... (-14.09 = -14.51 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:10 2011