Locus 7079

Sequence ID	dm3.chr3L
Location	12,011,704 – 12,011,801
Length	97
Max. P	0.891913

overview

Window 3

Location	12,011,704 – 12,011,801
Length	97
Sequences	11
Columns	101
Reading direction	forward
Mean pairwise identity	77.30
Shannon entropy	0.46831
G+C content	0.46764
Mean single sequence MFE	-18.56
Consensus MFE	-16.99
Energy contribution	-17.40
Covariance contribution	0.41
Combinations/Pair	1.10
Mean z-score	-0.82
Structure conservation index	0.92
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.10
SVM RNA-class probability	0.891913
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12011704 97 + 24543557
ACCUGAGAUAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUAGCAUGC-CAAGACCCCAAACCCCAAACCCC-AAGCCCCCC
...(((((.......))))).(((((....(((((.(((.....--))).....)))))..))))).-.......................-......... ( -19.20, z-score =  -1.47, R)
>droSim1.chr3L 11381501 90 + 22553184
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUAGCAUGC-CAAAACCCCAAACCCCAAGACCCCC--------
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-.........................-------- ( -19.60, z-score =  -1.99, R)
>droSec1.super_0 4197689 98 + 21120651
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCUGUGCGAUUUAU--UUGAGGAAGCGGCUAGCAUGC-CAAAACCCCCAACCUCAAACCCCCAAGACCCCC
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-................................. ( -17.40, z-score =  -0.83, R)
>droYak2.chr3L 12057984 79 + 24197627
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUAGCAUGC-CAAAAUCCCAAACC-------------------
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-..............------------------- ( -19.60, z-score =  -1.70, R)
>droEre2.scaffold_4784 11999285 94 + 25762168
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUAGCAUGC-CAAAAC--CAAAACCAAAACCCCAAACUCCC--
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-......--.......................-- ( -19.60, z-score =  -1.76, R)
>droAna3.scaffold_13337 11390828 96 - 23293914
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGGUUUAU--UUGAGGAAGCGGCUCGCAUGC-CAAAAACCAAAGAGCCACAGAGCUAAAUCCA--
...((((((.....)))))).....((((((((....)))..))--))).(((((((((((...((.-.......))..))))).....)))...))).-- ( -21.10, z-score =   0.25, R)
>dp4.chrXR_group8 9050515 77 + 9212921
ACCUGAGAAAUUGUUUUUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUCGCAUGC-CAAACCAACACA---------------------
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-............--------------------- ( -17.00, z-score =  -0.37, R)
>droPer1.super_50 399789 77 - 557249
ACCUGAGAAAUUGUUUUUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCUCGCAUGC-CAAACCAACACA---------------------
...((((((.....)))))).(((((....(((((.(((.....--))).....)))))..))))).-............--------------------- ( -17.00, z-score =  -0.37, R)
>droWil1.scaffold_180698 8517831 86 - 11422946
--CUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU--UUGAGGAAGCGGCAGAGAUAAACGAGAGACGACAUGCCAACAAC-----------
--........(((((((((..........((((((.(((.....--))).....)))))).........)))))))))............----------- ( -20.11, z-score =  -1.66, R)
>droMoj3.scaffold_6680 17624525 88 + 24764193
GCCUGAGAAAUUGUUUCUCCACAUGCAAAUGCCGUGCGAUUUAUAUUUGAGGAAGCGUCUCGCAUGC-CAAACGCCGAAAAGCCCCACA------------
((..((((...((((((..((.(((.((((((...)).)))).))).))..))))))))))))....-.....((......))......------------ ( -14.20, z-score =   1.29, R)
>droVir3.scaffold_13049 23011246 84 + 25233164
GCCUGAGAAAUUGUUUCUCCACAUGCAAAUGCCGUGCGAUUUAUAUUUGAGGAAGCGGCUCGCAUGC-CAAACC----AAAGCCCCACA------------
((..(((((.....)))))..(((((....(((((....((((....))))...)))))..))))).-......----...))......------------ ( -19.30, z-score =  -0.46, R)
>consensus
ACCUGAGAAAUUGUUUCUCAACAUGCAAAUGCCGUGCGAUUUAU__UUGAGGAAGCGGCUAGCAUGC_CAAAACCCCAAAACCCAAACA____________
...((((((.....)))))).(((((....(((((....((((....))))...)))))..)))))................................... (-16.99 = -17.40 +   0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:09 2011