| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,997,158 – 11,997,267 |
| Length | 109 |
| Max. P | 0.962051 |
| Location | 11,997,158 – 11,997,267 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.46 |
| Shannon entropy | 0.22277 |
| G+C content | 0.37177 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -22.00 |
| Energy contribution | -21.88 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11997158 109 - 24543557 GUUAUGUCAUUUGCAAACGCCACAAUGGCAAAUAUUGCCAAUCGCUUGUGGAAAGAAUGGCGAGUUUAGAAUUGCUAUUAGUUCCACAAAGCAAUGAUAAUGCGAUUUA ((..(((((((.((....((.....(((((.....)))))...))((((((((..((((((((........))))))))..)))))))).)))))))))..))...... ( -36.20, z-score = -4.06, R) >droSim1.chr3L 11365387 95 - 22553184 GUUAUAUCAUUUGCAAAUAU--------------UUGCCAAUCGCUUGUGGAAAGAAUGGGGAGUUUAGAAUUGCUAUUAGUUCCACCAAGCAAUGAUAAUGCGAUUUA ((..(((((((.((((....--------------)))).....((((((((((..(((((.((........)).)))))..))))).))))))))))))..))...... ( -27.40, z-score = -3.00, R) >droYak2.chr3L 12042814 95 - 24197627 GUUGUGUCAUUUGCAAAUAU--------------UUGCCAAUCGCCUGUGGAAAGAAUGGGAAGUUUAGAAUUGCUAUUAGUUCCAGCAAGCAAUGAUAAUGCGAUUCA ((..(((((((.((((....--------------)))).....((.(((((((..(((((.((........)).)))))..))))).)).)))))))))..))...... ( -23.30, z-score = -0.98, R) >droEre2.scaffold_4784 11984270 91 - 25762168 GUUAUGUCAUUUGCAAAC------------------GCCAAUCGCUUGUGGAAAGAAUGGGGAGUUUAGAAUUGCUAUUAGUUCCACCAUGCAAUGAUAAUGCGAUUUA ((..(((((((.(((...------------------((.....))..((((((..(((((.((........)).)))))..))))))..))))))))))..))...... ( -24.30, z-score = -1.68, R) >consensus GUUAUGUCAUUUGCAAACAU______________UUGCCAAUCGCUUGUGGAAAGAAUGGGGAGUUUAGAAUUGCUAUUAGUUCCACCAAGCAAUGAUAAUGCGAUUUA ((..(((((((.((......................((.....))..((((((..(((((.((........)).)))))..))))))...)))))))))..))...... (-22.00 = -21.88 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:05 2011