| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,914,396 – 11,914,509 |
| Length | 113 |
| Max. P | 0.662959 |
| Location | 11,914,396 – 11,914,509 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 62.37 |
| Shannon entropy | 0.63271 |
| G+C content | 0.45194 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -10.18 |
| Energy contribution | -11.52 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11914396 113 + 24543557 -----GGCAAUCGAGAUGGACUGUUACCGAUAGCCAUC--UCAUGCUAAUGACCUGUUAGUGUUCUGCGGAGGCAACUGUACUACUC-UGCACACAAGUUAUUUAAUUUAUUUCAUUUCCA -----((((...(((((((.(((((...))))))))))--)).))))(((((.......((((...((((((............)))-)))))))(((((....)))))...))))).... ( -29.90, z-score = -1.96, R) >droSim1.chr3L 11283544 102 + 22553184 -----GGCAAUCGAGAUGGACUGUUACCGAUAGCCAUC--UCAUGCUAAUGACCUGUUAGUGGUCUGCGGAGGCAACUGUACCACUC-UGCACACAAGCUAUUUAAUUUA----------- -----(((....(((((((.(((((...))))))))))--))..((((((.....)))))).((.(((((((............)))-)))).))..)))..........----------- ( -32.30, z-score = -2.51, R) >droSec1.super_0 4103096 87 + 21120651 -----GGCAAUCGAGAUGGACUGUUACCGUUAGCCAUC--UCAUGCUAAUGACCUGUUAGUGGUCUGCGGAGGCAACUGUACUACUCAUUUCCA--------------------------- -----((((...(((((((.(((.......))))))))--)).))))(((((...((((((.((((....)))).)))).))...)))))....--------------------------- ( -25.10, z-score = -1.12, R) >droYak2.chr3L 11958545 88 + 24197627 -----AGCCAUGGAGAUGGACUGUUAGCGAUAGCCAUC--GCAUGCUAAUGACCUGUUAGUGGUCUGUGGAGGCAACUGUACUCCUCUAGUUCCA-------------------------- -----..((((((((((((.(((((...))))))))))--....((((((.....))))))..))))))).((.(((((........))))))).-------------------------- ( -26.60, z-score = -0.45, R) >droEre2.scaffold_4784 11904124 99 + 25762168 -----GGCAAUCGAGAUGGACUGUUACCGAUAGCCAUC--UCCUGCUAAUGACCUGUUAGUGGUCUGUGGAGGCAACUGUACCGCUC-UGCACACGAUUUAUUUCAA-------------- -----((((...(((((((.(((((...))))))))))--)).))))...((((.......))))((((.((((.........)).)-).)))).((......))..-------------- ( -29.90, z-score = -1.66, R) >dp4.chrXR_group6 1901397 98 + 13314419 CAUUGUCUGGUAGAGCUUAAUCUUGGGCAAGACCUACGAACUAAGACGACUACCUGUAGGUCUUCUUUGCAAAAAUCCAAAACAAAAACUUAUUUUAA----------------------- ..((((.(((....(((((....)))))((((((((((................))))))))))............)))..)))).............----------------------- ( -18.39, z-score = -0.81, R) >consensus _____GGCAAUCGAGAUGGACUGUUACCGAUAGCCAUC__UCAUGCUAAUGACCUGUUAGUGGUCUGCGGAGGCAACUGUACCACUC_UGCACAC_A________________________ .....((((.....(((((.((((.....))))))))).....))))..........((((.((((....)))).)))).......................................... (-10.18 = -11.52 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:58 2011