| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,911,243 – 11,911,361 |
| Length | 118 |
| Max. P | 0.630500 |
| Location | 11,911,243 – 11,911,361 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.44 |
| Shannon entropy | 0.60340 |
| G+C content | 0.34147 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -11.71 |
| Energy contribution | -13.08 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11911243 118 + 24543557 UUAUAAGUUAGGACAAUAUUGUCAAUAACUGGCUUAUAGAAAGUGGCAAGGAAUUUUCUUCGACGAAAUGCUUUUUGUA--UCGAAUAUUUUUGUGGCUAUAUUGUAGUGCAGCUUUGAU (((((((((((((((....)))).....)))))))))))(((((.((.((((((.(((....((((((....)))))).--..))).))))))...(((((...))))))).)))))... ( -25.80, z-score = -1.03, R) >droAna3.scaffold_13337 6162436 92 + 23293914 UUACAAUUUAAAAAGGAAUUUGCAAAG---------UAGGUAUAGUCCGGAAAUUGUGCCAAGUGGAAUGGAAAUGAUAGAUCAGACCUUGCAAUACAAAU------------------- ...................((((((..---------..((((((((......)))))))).........((...(((....)))..)))))))).......------------------- ( -15.20, z-score = -0.52, R) >droEre2.scaffold_4784 11901041 118 + 25762168 UUAGAAGUUAGGACAAUAUUGUCAAUAACUGGCUUUUAGAAACUGGCAGGGAAUUUUAUUCGAUGGAAUGCAUUUCGCA--UCGAACAUUUUUGUGGGUAUAUUAUGCUAUAGCUUUGAU (((((((((((((((....)))).....)))))))))))..(((.(((((((......((((((((((.....))).))--)))))..))))))).))).......((....))...... ( -27.90, z-score = -2.06, R) >droYak2.chr3L 11954941 118 + 24197627 UUAUAAGCUGGGACAAUAUUGACAAUAUUUGGCUUAUAGAAAGUAGCAAGGAAUUUUCUGUGAAGGAAUGCAUUUUGCA--UCGAACAUUUUUGUGGCUAUACUAUAACAUAGCAUUGAG ((((((((..(....((((.....)))))..))))))))......((((((...(((((....)))))....)))))).--((((.(((....)))(((((........))))).)))). ( -22.20, z-score = -0.22, R) >droSec1.super_0 4099932 118 + 21120651 UUAUAAGUUAGGACAAUAUUGUCAAUAACUGGCUUACAGAAAGUGGCAAGGAAUUUUCUUCGACGAAAUGCUUUUGGCA--UCGAACAUUUUUGUGGCUAUACUGUAGUGCAGCUGUGAU ((((((((((.((((....))))..))))).((((((((..(((.(((((((......(((((.....(((.....)))--)))))..))))))).)))...)))))).))...))))). ( -27.20, z-score = -0.57, R) >droSim1.chr3L 11280449 118 + 22553184 UUAUAAGUUAGGACAAUAUUGUCAAUAACUGGCUUAUAGAAAGUGGCAAGGAAUUUUCUUCGACGAAAUGCUCCUGGCA--UCAAACAUUUUUGUGGCUAUAUUCUAUUGGAGCUUUGAU .....(((((.((((....))))..)))))(((((((((((.(((((.((((..((((......))))...))))....--.....(((....)))))))).))))))..)))))..... ( -27.90, z-score = -1.53, R) >consensus UUAUAAGUUAGGACAAUAUUGUCAAUAACUGGCUUAUAGAAAGUGGCAAGGAAUUUUCUUCGACGAAAUGCAUUUGGCA__UCGAACAUUUUUGUGGCUAUAUUAUAGUGCAGCUUUGAU (((((((((((((((....)))).....)))))))))))..(((.(((((((......(((((.....(((.....)))..)))))..))))))).)))..................... (-11.71 = -13.08 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:57 2011