| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,897,457 – 11,897,551 |
| Length | 94 |
| Max. P | 0.722950 |
| Location | 11,897,457 – 11,897,551 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.06 |
| Shannon entropy | 0.48213 |
| G+C content | 0.55053 |
| Mean single sequence MFE | -24.28 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11897457 94 - 24543557 AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC-UGAGCCGCAUUGCCGGUUAACUUCAC-AUAGCCUAACCCUCCACCUUCGAAC----------- ...................((((((((...(((((((((...)-)).)))))))))))(((((.......-.))))).............)))...----------- ( -23.70, z-score = -1.59, R) >droEre2.scaffold_4784 11887277 87 - 25762168 AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC-UCAGCCGCAUUGCCGGUUAAAGCCAC-ACAAGCAAACUCCCGACC------------------ ...............((.....(((((...((((((.......-...)))))))))))(((....)))..-....))............------------------ ( -19.80, z-score = -0.33, R) >droYak2.chr3L 11940173 105 - 24197627 AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC-UGAGCCGCAUUGCCGGUUAAAGCCAC-ACAACCCAACUCCUGACUCCCUACUCCCAACUUCCG .........(((....(((.(((((((...(((((((((...)-)).)))))))))))(((....)))..-..........))))).....)))............. ( -24.30, z-score = -1.59, R) >droSec1.super_0 4085692 98 - 21120651 AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC-UGAGCCGCAUUGCCGGUUAAGCUCAC-AUAGCCCUACUCUCCACCCCCAACCUCCG------- ...........((.....))..(((((...(((((((((...)-)).)))))))))))(((((.......-.))))).......................------- ( -22.50, z-score = -0.76, R) >droSim1.chr3L 11266024 94 - 22553184 AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC-UGAGCCGCAUUGCCGGUUAAGCUCAC-AUAGCCCAACCCUCGACCCCCGACC----------- ..............((...((((((((...(((((((((...)-)).)))))))))))((((..(((...-..)))..)))).))).....))...----------- ( -25.70, z-score = -1.80, R) >droWil1.scaffold_180949 548428 103 + 6375548 AAACUCAUUUAGCACGCAGCCAGGCGUAUAUGUGGCCACACACAUACGCCGACCUGACCUCGAUGAUGGUGACCCCCUUCCAUGUCCCUCGCCACCUCUAAGC---- ....(((((.((....(((...(((((((.((((....)))).)))))))...)))..)).)))))((((((....(......)....)))))).........---- ( -29.70, z-score = -2.76, R) >consensus AAACUCAUUUAGCACGCAGCGAGGCGAAUAUGUGGCCAGACAC_UGAGCCGCAUUGCCGGUUAAGCUCAC_ACAGCCCAACUCUCCACCCCCGACC___________ .......((((((..((((.(.(((......(((......)))....))).).))))..)))))).......................................... (-12.86 = -13.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:53 2011