| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,889,669 – 11,889,759 |
| Length | 90 |
| Max. P | 0.751304 |
| Location | 11,889,669 – 11,889,759 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 77.39 |
| Shannon entropy | 0.33154 |
| G+C content | 0.59888 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -18.98 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11889669 90 - 24543557 UGGCUAGGUGGUUGGUUGGGUGGUUUUGUGGGCGGUGAUGCGGCGACAAUAUGUUCGCUGCGUUUUCCCAACCCCCUCACCCCACUACCC ......((((((.(((.(((.(((....((((....((((((((((........))))))))))..))))))))))..)))..)))))). ( -38.30, z-score = -1.80, R) >droSim1.chr3L 11258290 74 - 22553184 ------------UGGCUAGCUGG-UUUGUGGGCGGUGGUGCGGCGACAAUAUGUUCGGUGCGUUUUCC---GCCCCUCAUCCCACUACCC ------------.((.(((.(((-..((.((((((...((((.(((........))).))))....))---))))..))..)))))))). ( -30.40, z-score = -1.69, R) >droSec1.super_0 4077859 73 - 21120651 ------------UGACUAGGUGG-UUUGUGGGCGGUGGUGCGGCGACAAUAUGUUCGCUGCGUUUUUC----CCCCUCAUCCCACUACCC ------------......(((((-..((.(((.((.((((((((((........))))))))))...)----)))).))..))))).... ( -30.50, z-score = -2.84, R) >droEre2.scaffold_4784 11879557 69 - 25762168 ------------UGGUUGGGUGG-CUUGUGGGCGGUGGUGCGGCGACAAUAUGCUCGCUGCGAUUUUC-------CCCACCCAACUGCC- ------------.((((((((((-((....)))((...((((((((........)))))))).....)-------).)))))))))...- ( -31.10, z-score = -1.99, R) >consensus ____________UGGCUAGGUGG_UUUGUGGGCGGUGGUGCGGCGACAAUAUGUUCGCUGCGUUUUCC____CCCCUCACCCCACUACCC ..................(((((....(((((.((.((((((((((........))))))))))........)).)))))....))))). (-18.98 = -19.48 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:51 2011