| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,878,849 – 11,878,961 |
| Length | 112 |
| Max. P | 0.942389 |
| Location | 11,878,849 – 11,878,961 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.33 |
| Shannon entropy | 0.44196 |
| G+C content | 0.46508 |
| Mean single sequence MFE | -25.66 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11878849 112 + 24543557 UUUUUUUUUCCACCCAUUUCCCAUGCUCUGCGGCGGAAAAAGUUUUUUCAGCUUGCGAGUCUAGGCAACUUUCUUUUGCCAUUCACUCAAUGCUUU--CUCUCCAGUAGGGCAC-- .......................((((((((((.(((.(((((.......(....)((((...(((((.......)))))....))))...)))))--.))))).)))))))).-- ( -27.00, z-score = -1.86, R) >droSim1.chr3L 11247902 112 + 22553184 --UUUUUUCCCUCCCAUUUCCCGCGCUCUGCGGCGGAAAAAGUUUUUCCAGCCUGCGAGUCUAGGCAACUUUCUUUUGCCAUUCACUCAAUGCUUU--CUCUCCAGUGGGGCACAC --................((((((((((.((((((((((.....))))).))).))))))...(((((.......)))))................--.......))))))..... ( -30.40, z-score = -1.81, R) >droSec1.super_0 4067576 91 + 21120651 -----------------------UGCUCUGCGGCGGAAAAAGUUUUUCCAGCUUGCGAGUCUAGGCAACUUUCUUUUGCCAUUCACUCAAUGCUUU--CUCUGUAGUAGGGCACAC -----------------------((((((((.(((((.(((((.......(....)((((...(((((.......)))))....))))...)))))--.))))).))))))))... ( -29.90, z-score = -2.61, R) >droYak2.chr3L 11921324 98 + 24197627 ---UUUUUUUCACAAUUUUCCCAUGCUUUGCGGCGGAAAAAGUUUUUCCCA-------------GCAACUUUCUUUUGCCAUUCAUUCGAUGCUUUCACUCCACAGUUGGGCAC-- ---................((((.(((.((.(((((((((((((.......-------------..)))))).)))))))........((.....))....)).)))))))...-- ( -17.60, z-score = -0.61, R) >droEre2.scaffold_4784 11869708 96 + 25762168 ---UUUUGUCCACAAUUUCGCCAUGCUCUGCGGCGGAAAAAGUUUUUCCAG-------------GCAACUUUCUUUUGCCAUUCACUCAAUGCCUU--CUCCUCAGUGGGGCAC-- ---...(((((((......((........))((((((((.....))))).(-------------((((.......)))))...........)))..--.......)).))))).-- ( -23.40, z-score = -1.01, R) >consensus ___UUUUUUCCACAAAUUUCCCAUGCUCUGCGGCGGAAAAAGUUUUUCCAGC_UGCGAGUCUAGGCAACUUUCUUUUGCCAUUCACUCAAUGCUUU__CUCUCCAGUAGGGCAC__ ........................((((((((((((((((((((......(((((......))))))))))).)))))))(((.....)))..............))))))).... (-18.28 = -18.82 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:50 2011