| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,875,091 – 11,875,194 |
| Length | 103 |
| Max. P | 0.644380 |
| Location | 11,875,091 – 11,875,194 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 68.17 |
| Shannon entropy | 0.64059 |
| G+C content | 0.46659 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -10.12 |
| Energy contribution | -9.97 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11875091 103 - 24543557 UCCGCCUCCAUCCAUUGGACAUUUGUGCGAUGAAUCUCGUUUUCCAGCUGGCAUACGAGCUGUGG-AAUGGGUUAAAAAUAAUAUA-CUACUUC-UUUUGAAACAC------------ ............(((((.((....)).)))))...(((((((..(((((.(....).)))))..)-))))))..............-....(((-....)))....------------ ( -23.20, z-score = -0.99, R) >droSim1.chr3L 11244157 104 - 22553184 UCCGCCUCCAUCCAUUGGACGUUUGUGCGGUGGAUCUCGUUUUCCAGCUGGCAUACAAGCUGUGG-AAUGGGUUAGGAAUAAUAUA-CUAUUUCAUUUUGGAACAC------------ ......(((((((((((.((....)).))))))).(((((((..(((((........)))))..)-))))))...((((((.....-.))))))....))))....------------ ( -32.50, z-score = -2.08, R) >droSec1.super_0 4063859 103 - 21120651 UCCGCCUCCAUCCAUUGGACGUUCGUGCGAUGGAUCUCGUUUUCCAGCUGGCAUACAAGCUGUGG-AAUGGGUUAGGAAUAAUAUA-UUAUUAC-UUUUGGAACAC------------ (((...(((((((((((.((....)).))))))))(((((((..(((((........)))))..)-))))))...))).(((((..-.))))).-....)))....------------ ( -33.10, z-score = -2.67, R) >droYak2.chr3L 11917435 93 - 24197627 UCCGCUUCCAUCCAUUGCACGUUGGUGCGGUGGAUCUCGUUUUCCAGCUGGCAGACGAGCUAUGG-AGUAGGUUAGGGA---UAUA-UUAUUUCAUUU-------------------- .((..(((((((((((((((....)))))))))).(((((((.((....)).)))))))...)))-))..))...(..(---((..-.)))..)....-------------------- ( -33.20, z-score = -3.03, R) >droEre2.scaffold_4784 11865823 102 - 25762168 UCCGCCUCCAUCCACUGCACGUUGGUGCGGUGGAUCUCGUUUUCCAGCUGACAUACGAGCUGUGG-AUUAGGUCAAUGAU--UAUA-UUAUUUCAUUUCGGAACAC------------ ((((((((((((((((((((....))))))))))..........(((((........))))))))-)...))).(((((.--....-.....)))))..)))....------------ ( -33.20, z-score = -2.77, R) >dp4.chrXR_group6 1863707 101 - 13314419 UCCGCCUCCAUCCACUGCACAUUGGUGCGAUGUAUCUCGUUCUCCAGCUGGCAGACGAGCUGU---AAUUCCCCACAGGUUACUAC-UUACUCCUUCUGGGGCCC------------- ...(((.(((....((((.((((((.((((......))))...)))).))))))..(((..((---(.(..((....))..).)))-...)))....))))))..------------- ( -27.40, z-score = -0.78, R) >droPer1.super_9 160269 101 - 3637205 UCCGCCUCCAUCCACUGCACAUUGGUGCGAUGUAUCUCGUUCUCCAGCUGGCAGACGAGCUGU---AAUUCCCCACAGGUUACUAC-UUACUGCUUCUGGGGCCC------------- ...(((..((((((((.......)))).))))...........((((..(((((..(((..((---((((.......))))))..)-)).))))).)))))))..------------- ( -28.80, z-score = -0.82, R) >droMoj3.scaffold_6680 5000877 112 + 24764193 UCAGCCUCCAUCCACUGCACAUUGGUGCGAUGUAUCUCAUUCUCCAGCUGGCAAACAAGCUGA---GAAGGCAGA-AAUCAAGGAA-UUGCUUAGGCUGGGAGUCGUCUAUAUGAUA- (((((((.(((((...((((....))))(((...((((.(((((.((((........))))))---))).).)))-.)))..))).-.))...)))))))..(((((....))))).- ( -33.40, z-score = -0.67, R) >droVir3.scaffold_13049 16923361 118 - 25233164 UCAGCUUCCAUCCACUGUACAUUCGUGCGAUGUAUCUCGUUCUCCAACUGACAAACAAGCUGAGGAAACCCAAUUUGUUAGAUGCGUUUAUCCAUAGUGAUAAUGUACUAUAAGAAAC ............((((((((....))))(((((((((.(((........))).((((((.((.(....).)).))))))))))))))).......))))................... ( -22.20, z-score = -0.52, R) >droGri2.scaffold_15110 9330592 101 + 24565398 UCCGCCUCCAUCCACUGCACAUUGGUGCGAUGGAUCUCAUUUUCCAGCUGACAGACAAGCUAUGGAAAUGCGUUCAAA----UAUC-AUGUUCAUUUAUAGAAAAC------------ ..(((.((((((((((.......)))).))))))......(((((((((........)))..)))))).)))......----....-...................------------ ( -23.00, z-score = -1.04, R) >consensus UCCGCCUCCAUCCACUGCACAUUGGUGCGAUGGAUCUCGUUUUCCAGCUGGCAGACAAGCUGUGG_AAUGGGUUAAAAAUAAUAUA_UUAUUUCUUUUGGGAACAC____________ ........(((((((.........))).))))............(((((........)))))........................................................ (-10.12 = -9.97 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:49 2011