| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,860,534 – 11,860,625 |
| Length | 91 |
| Max. P | 0.828399 |
| Location | 11,860,534 – 11,860,625 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 70.70 |
| Shannon entropy | 0.38070 |
| G+C content | 0.29655 |
| Mean single sequence MFE | -17.64 |
| Consensus MFE | -6.91 |
| Energy contribution | -7.70 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11860534 91 + 24543557 AAAAAAGUAAGUUUCGCUAAUAGGCGGCUGUAGAAAAGGGAAUGACGAACAGAACCCUCUUGUUUCGUUCUCAUACUAAACUACUUUUUAA .((((((((.((((((((....))))...........((((((((..((((((....)).)))))))))))).....)))))))))))).. ( -22.40, z-score = -2.09, R) >droSec1.super_0 4049418 74 + 21120651 -----------------AAAAAAGUAAGUAUCGAUAAUGGAAUGUCGAACAGAACCGUCUUAUUUCCUUAUUAUACUAAACUACUUUUUAA -----------------.(((((((((((((.(((((.((((.(.((........)).)....))))))))))))))....)))))))).. ( -14.90, z-score = -2.80, R) >droSim1.chr3L 11228869 74 + 22553184 -----------------AAAAAAGUAAGUUUCGAUAAUAGAAUGUCGAAGAGAACCCUCUUAUUUGCUUAUUAUACUAAACUACUUUUUAA -----------------.((((((((.((((.((((((((.......(((((....)))))......))))))).).)))))))))))).. ( -15.62, z-score = -3.41, R) >consensus _________________AAAAAAGUAAGUAUCGAUAAUGGAAUGUCGAACAGAACCCUCUUAUUUCCUUAUUAUACUAAACUACUUUUUAA ..................(((((((((((((.(((((.((((((......(((....))))))))).))))))))))....)))))))).. ( -6.91 = -7.70 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:47 2011