| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,860,101 – 11,860,194 |
| Length | 93 |
| Max. P | 0.920247 |
| Location | 11,860,101 – 11,860,194 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 60.06 |
| Shannon entropy | 0.79751 |
| G+C content | 0.50765 |
| Mean single sequence MFE | -27.45 |
| Consensus MFE | -10.71 |
| Energy contribution | -10.74 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.93 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11860101 93 - 24543557 GAUCCAACAUCCACCAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCG--GUGCUGCUGCUGUGGCA--GACUAGUCGAUGAUUAAAA ..............((((.(((.((((......((((.((((((....))))))...--..))))......)))).--.....)))))))....... ( -26.90, z-score = 0.21, R) >droSim1.chr3L 11228462 87 - 22553184 ------ACAUCCAGCAUCCGACGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCG--CUGCUGCUGUUGUGGCC--GACUAGUCGAUGAUUAAAA ------........((((.((((((((.((((.((((.((((((....))))))...--..))))..)))))))))--.....)))))))....... ( -32.20, z-score = -1.99, R) >droSec1.super_0 4049019 80 - 21120651 -------------GCAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCG--CUGCUGCUGUUGUGGCC--GACUAGUCGAUGAUUAAAA -------------.((((....(((((.((((.((((.((((((....))))))...--..))))..)))))))))--((....))))))....... ( -31.50, z-score = -2.30, R) >droYak2.chr3L 11902093 89 - 24197627 UAUCCAACAUCCAGCAUCGAAGGGCCAACAAUCCAGCUGGGUCCUG-UGGGCCUAC-----GCCGCUGCUGUGGCA--GACUAGUCGAUGAUUAAAA ..............((((((.(((((.(((((((....))))..))-).)))))..-----(((((....))))).--......))))))....... ( -31.00, z-score = -1.63, R) >droEre2.scaffold_4784 11848190 84 - 25762168 ------ACAUCCAGCAUCCAAUGGCCAACAAUCCAGCUGGGCCCCUUUGGGCCUCC-----GCUGCUGCUGUGGCG--GACUAGUCGAUGAUUAAAA ------.((((((((......(((........)))))))(((((....)))))(((-----((..(....)..)))--))......))))....... ( -30.00, z-score = -1.39, R) >droWil1.scaffold_180949 5879395 96 - 6375548 -UUUUUGUUUUGCUUUUCUAAAAACCCUUAAGCAUAUUAAUCCACACUGUUUUUGGGAAUGAAUGAGUUUCAGGCAAGAGUUAGUCGAUGAUUAAAA -......(((((((..........(((..(((((.............)))))..)))..((((.....))))))))))).((((((...)))))).. ( -16.62, z-score = -0.04, R) >droMoj3.scaffold_6680 4985912 90 + 24764193 ----UAAUAUCGUGCUGCAUACUUUUGGGCAACACUGUAGUUGGCACUCCUAACUCG---GGAGUCUUAAGUGGUCCAACUUGGCAAAUGAUUCAAA ----....(((((..(((......((((((..((((......((.((((((.....)---)))))))..))))))))))....))).)))))..... ( -23.90, z-score = -1.42, R) >consensus ______ACAUCCAGCAUCCAAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCG___UGCUGCUGCUGUGGCA__GACUAGUCGAUGAUUAAAA .......................((((......((((.((((((....)))))).......))))......))))...................... (-10.71 = -10.74 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:46 2011