| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,888,846 – 4,888,937 |
| Length | 91 |
| Max. P | 0.783585 |
| Location | 4,888,846 – 4,888,937 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 57.54 |
| Shannon entropy | 0.69887 |
| G+C content | 0.36668 |
| Mean single sequence MFE | -17.05 |
| Consensus MFE | -7.41 |
| Energy contribution | -6.58 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4888846 91 - 23011544 UGGGUCCAUAUUCAUGCGUACAGUGAGCACUCUAUAAAAAGAAUCCGCUCAUUUAACUAGAACAAUUUCAAUAGUUUGCUUGCACUAAUUU----------------------- (((((((((....))).).)).(..((((..((((.....((......)).........(((....))).))))..))))..).)))....----------------------- ( -12.70, z-score = 0.39, R) >droSim1.chr2L 4758901 72 - 22036055 UGGGUCCAUGUUCAUGCGUACAGUGAGCACUCUAUGAAGAGAAACGAC-------------------UCAAAAAUUUGCUUGCACUAAUUU----------------------- ((((((..(((((((.......)))))))((((....))))....)))-------------------))).....................----------------------- ( -16.50, z-score = -1.11, R) >droSec1.super_5 2983541 72 - 5866729 UGGGUCCAUGUUCAUGCGUACAGUGAGCACUCUAUGAAGGGGAACGAC-------------------UUAAUAAUUUGCUUGCACUCAUUU----------------------- (((((..((((....))))...(..((((...(((.(((........)-------------------)).)))...))))..))))))...----------------------- ( -14.80, z-score = 0.04, R) >droYak2.chr2L 4899897 91 - 22324452 UGGGUCCAUGCUCACACGUACAGUGAGCACUCUAUGAAGAGACACGAAUGAUUUAACAAGAAUAUUUUUAAUAAUUUACCUGCAGUUUUUA----------------------- .((((...(((((((.......)))))))((((....))))....................................))))..........----------------------- ( -16.50, z-score = -0.86, R) >droEre2.scaffold_4929 4970934 91 - 26641161 UGGGUCCAUGCUCACACGUACAGUGGGCACUCUAUUAAGAGAUACGGCUUUUUUAACACGAAUUGUUGUAAUAAUUUACGGGCACUGAUUU----------------------- .((((((.(((((((.......)))))))((((....)))).((((((..(((......)))..)))))).........)))).)).....----------------------- ( -24.00, z-score = -2.58, R) >droMoj3.scaffold_6500 26421207 109 - 32352404 UGAAGCUCUUUUUAUUUGUUACGAAAGAAUUGUGUGAAAAAGCUU-ACUCUCUAAACUCAA----CCUUAUUAUUGAACCUAGACUUAUUUUAAAUAUGUAUGUAUAUACAUAU ..(((((.(((((((..(((.(....))))...))))))))))))-....((((...((((----........))))...))))..........((((((((....)))))))) ( -17.80, z-score = -2.04, R) >consensus UGGGUCCAUGUUCAUGCGUACAGUGAGCACUCUAUGAAGAGAAACGACU__UUUAAC__GA____UUUUAAUAAUUUACUUGCACUAAUUU_______________________ ........(((((((.......)))))))((((....))))......................................................................... ( -7.41 = -6.58 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:42 2011