| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,854,480 – 11,854,598 |
| Length | 118 |
| Max. P | 0.696406 |
| Location | 11,854,480 – 11,854,598 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.37818 |
| G+C content | 0.42811 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -17.66 |
| Energy contribution | -19.74 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11854480 118 - 24543557 AGGCGACAC--AGAGGGGCUUUGAGAGGUCAAAUAAUCGCUAAAUCAGGGAAAUGAAUAUGAGUCCCGAUCGUCUGGCUCGAUGAAAAUGUUUGGUCUCUUAAUGCCUUUUACGAUUUUA .(....)..--.(((((((.(((((((..((((((............((((.((....))...))))..(((((......)))))...))))))..))))))).)))))))......... ( -35.90, z-score = -2.00, R) >droEre2.scaffold_4784 11843404 115 - 25762168 AGGCGACAC---AAGGGGCAUGGAAAGGUCAAAUAAUCGCUAAAUCAGGGGAG--AAUAUGACUGCAGAACGUCUGGCCCGAUGAAAAUUAUUGGUCUCUUAAUGCCGUUUACGAUUUUG .((((((.(---((.((((.......(((((.((..((.((......)).)).--.)).))))).(((.....)))))))(((....))).)))))).......)))............. ( -26.81, z-score = -0.07, R) >droYak2.chr3L 11897154 115 - 24197627 AGGCGACAC---AGGGGCCUUGGAAAGGUCAAAUAAUCGCUAAAUCAGGGUAG--AAUAUGACUUCAGAGCGUCUGACCCGAUCGAAAUUAUUGGUCCCUUAAUGCCUUUUGUGAUUUUA (((((....---(((((((((((...(((......))).))))(((.((((((--(...((....)).....))).)))))))..........)))))))...)))))............ ( -28.80, z-score = -0.00, R) >droSec1.super_0 4044697 98 - 21120651 AGGCGACAC--AAAGGGGCUUUGAGAGGUCAAAUAAUCGCUAAAUCAGGGGAA--AAUGCGACUUCAGAU------------------UGUUUGGUCUCUUAGUGCCCUUUAGGAUUUUA .(....).(--.(((((((.(((((((..(((((((((((....((....)).--...))(....).)))------------------))))))..))))))).))))))).)....... ( -34.80, z-score = -3.69, R) >droSim1.chr3L 11224035 100 - 22553184 AGGCGACACAGAGAGAGGCUUUGAGAGGUCAAAUAAUCGCUAAAUCAGGGGAA--AAUGCGACUUCAGAU------------------UGUUUGGUCUCUUAAUGCCUUUUACGAUUUUA .(....)...(.(((((((.(((((((..(((((((((((....((....)).--...))(....).)))------------------))))))..))))))).))))))).)....... ( -33.60, z-score = -3.68, R) >consensus AGGCGACAC__AAAGGGGCUUUGAGAGGUCAAAUAAUCGCUAAAUCAGGGGAA__AAUAUGACUUCAGAUCGUCUG_C_CGAU__AAAUGUUUGGUCUCUUAAUGCCUUUUACGAUUUUA .(....).....(((((((.(((((((..((((((.((.((.....)).))...................((((......))))....))))))..))))))).)))))))......... (-17.66 = -19.74 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:44 2011