| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,792,223 – 11,792,326 |
| Length | 103 |
| Max. P | 0.898196 |
| Location | 11,792,223 – 11,792,326 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 62.82 |
| Shannon entropy | 0.75920 |
| G+C content | 0.42303 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -11.33 |
| Energy contribution | -10.82 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11792223 103 - 24543557 -----------CUUAAUCAUCCCUUUAUCUACAUAUAUAUUUAACUAAUAUUAAAUUUCAGCCCGUGGCAUCUAUGUCAUCGGAUUUAGCUAUCCGGUGGUUCCUCAGGGAAAG -----------........(((((......(((((...((((((......))))))....(((...)))...)))))((((((((......)))))))).......)))))... ( -22.60, z-score = -2.15, R) >droGri2.scaffold_15110 14887115 104 + 24565398 --------GCUAAAUACGC--AUCUGGACUACAUAUACAGUUGCCACUUUAUUUAUUGCAGCACGUGGCAUUUAUGUCAUUGGAUUCAGCUAUCCAGUGGUGCCGCAGGGCAAG --------(((......((--(.(((...........))).)))...........((((.((((..((((....))))(((((((......))))))).)))).)))))))... ( -29.20, z-score = -1.01, R) >droVir3.scaffold_13049 24017771 111 - 25233164 UUUGAUUGGCCAUUCUCCCCUUUUUGUGUUACAUUAAAAUUUG---UUUUAAUUCCUGCAGCACGCGGCAUUUAUGUCAUAGGCUUCAGCUAUCCGGUGGUGCCACAAGGCAAG ........(((..............(((((.((((((((....---))))))....)).)))))..((((....))))...(((.(((.(.....).))).)))....)))... ( -21.40, z-score = 1.23, R) >dp4.chrXR_group8 4898714 98 + 9212921 --------------CCUAAGGAUCUCUUUUCCAUCCACUCAUUGCAAUUUCUGUCUU--AGCUCGCGGCAUCUACGUGAUUGGAUUCAGUUAUCCGGUGGUGCCCCAGGGCAAG --------------((...((((..((..((((..(((....(((.......((...--.)).....))).....)))..))))...))..))))...))((((....)))).. ( -24.60, z-score = -0.42, R) >droPer1.super_29 550918 98 + 1099123 --------------CCUAAGGAUCUCUUUUCCAUCCACUCAUUGCGAUUCCUGUCUU--AGCUCGCGGCAUCUACGUGAUUGGAUUCAGUUAUCCGGUGGUGCCCCAGGGCAAG --------------.....(((.......)))......((((((.(((..(((..((--...(((((.......)))))...))..)))..)))))))))((((....)))).. ( -27.10, z-score = -0.72, R) >droWil1.scaffold_181024 1652658 105 - 1751709 ---------CCCCCCUAAAAAAUCCUUGCUCUAAUGUUUAAAAAUGUCUUUACUGCUUUAGCUCGCGGUAUUUAUGUUAUUGGCUUUAGUUAUCCGGUGGUUCCUGAAGGCAAG ---------...............(((((.((((((..((((........((((((........))))))))))...))))))((((((..(((....)))..))))))))))) ( -20.30, z-score = -0.51, R) >droSim1.chr3L 11157631 103 - 22553184 -----------CUUAAUUAUACCUUUAUCUACAUAUAUAUUAAACUUAUAUUAAAUUUCAGCCCGUGGCAUCUAUGUCAUCGGAUUUAGCUAUCCGGUGGUUCCUCAGGGAAAG -----------...................(((((((((.......))))..........(((...)))...)))))((((((((......)))))))).((((....)))).. ( -18.60, z-score = -0.64, R) >droSec1.super_0 3978062 102 - 21120651 -----------CUUAAUCAUACCUUUAUAUACAUAUAUAUUAAACUAA-AUUCAUUUCCAGCCCGUGGCAUCUAUGUCAUCGGAUUUAGCUAUCCGGUGGUUCCGCAAGGAAAG -----------......((((....(((((....))))).........-...........(((...)))...))))(((((((((......)))))))))((((....)))).. ( -21.70, z-score = -1.98, R) >droYak2.chr3L 11821301 102 - 24197627 -----------CUGAAUAAUUCCUUUAUCUAU-UCUGUAAUAAACCAAUCAUAAAUUUCAGCCCGUGGCAUCUACGUUAUCGGAUUCAGCUAUCCGGUGGUUCCCCAAGGAAAG -----------........((((((....(((-(....))))((((..............(((...))).........(((((((......)))))))))))....)))))).. ( -17.80, z-score = -0.31, R) >droEre2.scaffold_4784 11770053 102 - 25762168 -----------CUUAACUAUCGCCUUAUGUAU-UCCACAUUAAACUAAUCAUAAAUUUCAGCCCGUGGCAUCUACGUUAUCGGAUUUAGCUAUCCGGUGGUUCCUCAAGGAAAG -----------...........((((..(...-.((((......................(((...)))...........(((((......)))))))))...)..)))).... ( -18.00, z-score = -0.54, R) >droAna3.scaffold_13337 6046445 97 - 23293914 --------------UCCCAUUAUCCUGUGACUCCUUAUUAAAGCUAGUACCUUUAC---AGCUCGAGGUAUUUAUGUCAUUGGCUUCAGUUACCCAGUGGUUCCCCAGGGCAAG --------------.....((..((((.(((..((.(((.(((((((((((((...---.....))))))).........)))))).))).....))..)))...))))..)). ( -18.80, z-score = 0.37, R) >consensus ___________CUUAAUAAUAAUCUUAUCUACAUAUAUAUUAAACUAAUCAUAUAUUUCAGCCCGUGGCAUCUAUGUCAUCGGAUUCAGCUAUCCGGUGGUUCCCCAGGGCAAG ............................................................((.....)).......(((((((..........)))))))((((....)))).. (-11.33 = -10.82 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:39 2011