| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,748,237 – 11,748,319 |
| Length | 82 |
| Max. P | 0.903306 |
| Location | 11,748,237 – 11,748,319 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 76.46 |
| Shannon entropy | 0.42738 |
| G+C content | 0.44801 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11748237 82 + 24543557 CCACGUUCGUGGAUAAUUUCACAAAACCAAUUCGCAGCGAACGA--------AUUCAUUGUUCGCUAUUUUUGGGGGUUCGGUGCUAAAA ((((....)))).......(((..((((.......(((((((((--------.....))))))))).........))))..)))...... ( -22.89, z-score = -2.15, R) >droEre2.scaffold_4784 11726891 70 + 25762168 CCACGUUCGUGGACAAUUUCACAAAACCAAUUCGCAUCGAACGG--------AUUCAUUGUUCGCUGUUUUUGGGGCU------------ ((((....))))..............((((...(((.(((((((--------.....))))))).)))..))))....------------ ( -17.70, z-score = -1.29, R) >droYak2.chr3L 11777601 78 + 24197627 CCACGUUCGUGGACAAUUUCACAAAACCAAUUCGCAUCGAACGAGAACGAGAAUUCAUUGUUCGCUGUUUUUGGGGCU------------ ((((....))))..............((((...(((.((((((((((......))).))))))).)))..))))....------------ ( -20.60, z-score = -1.33, R) >droSec1.super_0 3933828 80 + 21120651 CCACGUUCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAACGA--------AUUCAUUGUUCGCUGUUUGGGGCUUCGGUGCUAAAA-- ((((....)))).....................(((((((((((--------.....)))))))))))((((.((....)).))))..-- ( -27.60, z-score = -3.40, R) >droSim1.chr3L 11112223 84 + 22553184 CCACGUUCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAACGAC-----GAAUUCAUUGUUCGCUGUUUUGGGGCUUCGGUGCUAAAA- ((((....)))).....................(((((((((((.-----(....).)))))))))))(((((.((....)).))))).- ( -29.20, z-score = -3.34, R) >droAna3.scaffold_13337 6003426 63 + 23293914 CCGCGUUCGUGGACAAUUUCACAAAACCAAUUCAAAGCGAACGA--------AUUCAUUGUUCG--GUUUGGU----------------- ((((....))))...................(((((.(((((((--------.....)))))))--.))))).----------------- ( -16.70, z-score = -1.76, R) >consensus CCACGUUCGUGGACAAUUUCACAAAACCAAUUCGCAGCGAACGA________AUUCAUUGUUCGCUGUUUUGGGGGCU____________ ((((....))))..............((.....(((.(((((((.............))))))).))).....))............... (-11.14 = -11.72 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:35 2011