| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,696,922 – 11,697,020 |
| Length | 98 |
| Max. P | 0.680669 |
| Location | 11,696,922 – 11,697,020 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.38 |
| Shannon entropy | 0.41060 |
| G+C content | 0.49468 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.36 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11696922 98 - 24543557 AAAAAGGUCAC-UGGCGUAUAAAUAGAAAAGCAAUUUUCCGCUGCAGCUCGUAGUUUUUCCCGCUGCGCCUGCUGCCUGCCACUCAAGUCAGCCAGUGA- .......((((-((((.........(((((....))))).((.(((((.((((((.......))))))...)))))..))...........))))))))- ( -34.60, z-score = -3.26, R) >droSim1.chr3L_random 540503 98 - 1049610 AAAAAGGUCAC-UGGCGUAUAAAUAGAAAAGCAAUUUUCCGCUGCAGCUCGUAGUUUUUCCCGCUGCGCCUGCUGCCUGCCACUCAAGUCAGCCAGUGA- .......((((-((((.........(((((....))))).((.(((((.((((((.......))))))...)))))..))...........))))))))- ( -34.60, z-score = -3.26, R) >droSec1.super_0 3883165 98 - 21120651 AAAAAGGUCAC-UGGCGUAUAAAUAGAAAAGCAAUUUUCCGCCGCAGCUCGUAGUUUUUCCCGCUGCGCCUGCUGCCUGCCACUCAAGUCAGCCAGUAA- .........((-((((.........(((((....))))).((.(((((.((((((.......))))))...)))))..))...........))))))..- ( -30.00, z-score = -2.44, R) >droYak2.chr3L 11727533 90 - 24197627 AAAAAGGUCAC-UGGCGUAUAAAUAGAAAAGCAAUUUUCCGCUGCAGCUCGUAGUUUUUCCCGCUGC-------GCCUGCCACUC-UGCCAGUCACUCA- .....(((.((-((((.........(((((....)))))....((((..((((((.......)))))-------).)))).....-.)))))).)))..- ( -26.70, z-score = -2.68, R) >droEre2.scaffold_4784 11679826 86 - 25762168 AAAAAGGUCAC-CGGCGUAUAAAUAGAAAAGCAAUUUUCCGCUGCAGCUCGUUGUUUUUCCCGCUGC-------GCCUGCCACUC-AGUCAGCCA----- .....(((...-.((((((......((((((((((.....((....))..))))))))))....)))-------))).)))....-.........----- ( -19.80, z-score = -0.28, R) >droAna3.scaffold_13337 5961715 96 - 23293914 AAAAAGGUCACAAGGCAUAAAAAUAGAAAAGCGAUUUGCAG-UGAGUCCCGCCCUCCGUCCAAUUUUCC---CCGCUUUUCAUGGCUGUUUUCCCGCCCU .............(((.........((((((((..(((..(-.(((.......))))...)))......---.))))))))..((........))))).. ( -16.10, z-score = 0.46, R) >consensus AAAAAGGUCAC_UGGCGUAUAAAUAGAAAAGCAAUUUUCCGCUGCAGCUCGUAGUUUUUCCCGCUGCGC___CUGCCUGCCACUCAAGUCAGCCAGUCA_ .....(((.....(((.........(((((....)))))....(((((..............))))).......))).)))................... (-13.52 = -13.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:30 2011