| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,673,713 – 11,673,819 |
| Length | 106 |
| Max. P | 0.623070 |
| Location | 11,673,713 – 11,673,819 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 89.12 |
| Shannon entropy | 0.18599 |
| G+C content | 0.59241 |
| Mean single sequence MFE | -43.62 |
| Consensus MFE | -31.79 |
| Energy contribution | -32.63 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11673713 106 - 24543557 GUGCCAACUGCAGCACGUGAACACCCACGGGCGUCCAGCCUGCAGAGUUGCCUG-----------AAUGGCUCGGAAAAGCCCAGUCGCUCAAAGGGUGGGAAACUACUCCGCGGAA .......((((((((((((......)))((((.(((((((..(((......)))-----------...)))).)))...)))).)).)))....((((((....)))).)))))).. ( -44.70, z-score = -2.25, R) >droEre2.scaffold_4784 11656183 105 - 25762168 GUGCCAACUGCAGCACGUGAACACCCAC-GGCUAUCAGCCUGGGGAGUUGCAUG-----------AAUUGCUCGGAAAAGCCCAGUGGCUCGUAGGGUGGGAAACUACUCCGCGGAA ..((((.((((((..(((((((.((((.-(((.....)))))))..))).))))-----------..))))..((......))))))))(((..((((((....))))))..))).. ( -43.70, z-score = -2.27, R) >droYak2.chr3L 11702357 116 - 24197627 CUGUCAGCUGCAGCACGUGAACACCCAC-GGCGUCCAGCCUGAAGAGUUGCCUGAGUUAAAAAAAAAUGGCUCGGAAAAGCCCAGUCGCUGGGAGGGUGGGAAACUACUCCGCGGAA ...(((((((..((.((((......)))-)))...))).))))....((((((((((((........)))))))).....(((((...))))).((((((....)))).)))))).. ( -41.60, z-score = -1.26, R) >droSec1.super_0 3860043 106 - 21120651 GUGCCAACUGCACCACGUGAACACCCACGGGCGUCCAGCCUGCAGAGUUGCCUG-----------AAUGGCUCGGAAAAGCCCAUUCGCUCGAAGGGUGGGAAACUACUCCGCGGAA ((((.....))))...(((......)))((((.(((((((..(((......)))-----------...)))).)))...)))).(((((.....((((((....)))))).))))). ( -43.40, z-score = -2.25, R) >droSim1.chr3L 11043537 106 - 22553184 GUGCCAACUGCAGCACGUGAACACCCACGGGCGUCCAGCCUGCAGAGUUGCCUG-----------AAUGGCUCGGAAAAGCCCAGUCGCUCGAAGGGUGGGAAACUACUCCGCGGAA .......((((((((((((......)))((((.(((((((..(((......)))-----------...)))).)))...)))).)).)))....((((((....)))).)))))).. ( -44.70, z-score = -2.01, R) >consensus GUGCCAACUGCAGCACGUGAACACCCACGGGCGUCCAGCCUGCAGAGUUGCCUG___________AAUGGCUCGGAAAAGCCCAGUCGCUCGAAGGGUGGGAAACUACUCCGCGGAA .......(((((((..(((......)))((((.(((((((............................)))).)))...))))....)))....((((((....)))).)))))).. (-31.79 = -32.63 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:26 2011