Locus 7043

Sequence ID dm3.chr3L
Location 11,672,384 – 11,672,451
Length 67
Max. P 0.517725
window9701

overview

Window 1

Location 11,672,384 – 11,672,451
Length 67
Sequences 5
Columns 68
Reading direction reverse
Mean pairwise identity 68.69
Shannon entropy 0.56587
G+C content 0.45042
Mean single sequence MFE -19.78
Consensus MFE -7.92
Energy contribution -7.88
Covariance contribution -0.04
Combinations/Pair 1.61
Mean z-score -1.45
Structure conservation index 0.40
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.05
SVM RNA-class probability 0.517725
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11672384 67 - 24543557
AUAAGCCAGUUCGAUUUGCAUGGCAACGAAGUGGCAAGUGGAGAGGCAUUUA-UCGAUGCCCUCGGAA
....((((.((((..((((...)))))))).)))).....(((.((((((..-..))))))))).... ( -25.60, z-score =  -3.31, R)
>droAna3.scaffold_13337 5938133 60 - 23293914
-------GUUCCAUUGCAUAUGGU-UCUUAUUGUUGGAUGAAGGAAUAUUCAUUGGAUUCUUUGGAAA
-------...((((.....))))(-(((....(((.((((((......)))))).))).....)))). ( -12.00, z-score =  -0.61, R)
>droEre2.scaffold_4784 11654985 68 - 25762168
AUAAGCUAGUGCAAUUUGCAUGGCAACAAAGUGUCAAGUGGAGAGGCAUUUACCCUAUGCUUUCGGCA
....((((.(((.....))))))).............((.(((((.(((.......)))))))).)). ( -16.90, z-score =  -0.06, R)
>droYak2.chr3L 11700977 67 - 24197627
AUAAGCUAGUGCAAUUUGCAUGGCAACGGAGUGCCAAGUGGAAAGGCAUUUG-CCGAUGCUUUCGGCA
.......(((((..((..(.(((((......))))).)..))...)))))((-((((.....)))))) ( -24.10, z-score =  -1.79, R)
>droSec1.super_0 3858733 67 - 21120651
AUAAGCCAGUUCAAUUUGCAUGGCAACGAAGUGGCAAGUGGAGGGGCAUUUA-CCGAUGCCAUCGGAA
....((((.(((...((((...)))).))).)))).....((..((((((..-..)))))).)).... ( -20.30, z-score =  -1.48, R)
>consensus
AUAAGCCAGUGCAAUUUGCAUGGCAACGAAGUGGCAAGUGGAGAGGCAUUUA_CCGAUGCUUUCGGAA
..............(((((.(((((......))))).)))))((((((((.....))))))))..... ( -7.92 =  -7.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:25 2011