| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,671,644 – 11,671,753 |
| Length | 109 |
| Max. P | 0.739847 |
| Location | 11,671,644 – 11,671,753 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.87 |
| Shannon entropy | 0.60133 |
| G+C content | 0.60974 |
| Mean single sequence MFE | -38.07 |
| Consensus MFE | -18.63 |
| Energy contribution | -20.11 |
| Covariance contribution | 1.49 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11671644 109 + 24543557 ----------CCGCCUUCGCCCGAAUCCGGGGUUCCAGGGUCCGGGUGGAGAGUCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA-GUAUCGAUUUUCGACCCGUGGCUUUCCCCG ----------.................(((((....(((((((((((.(((((((((((..(....)..))))((((((....))))))-.....))))))).))))).))))))))))) ( -47.30, z-score = -1.91, R) >droSim1.chr3L 11041678 109 + 22553184 ----------CCGCCUUCGCCCGAAUCCGGGCUUCCAGGGUCCGGGUGGAGAGUCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA-GUAUCGAUUUUCGCCCCAUGCUUUUCCCCG ----------..(((((.(((((....)))))....)))))..(((..(((((((((((..(....)..))))((((((....))))))-.....)))))))..)))............. ( -40.70, z-score = -0.95, R) >droSec1.super_0 3858061 109 + 21120651 ----------CCGCCUUCGCCCGAAUCCGGGCUUCCAGGGUCCGGGUGGAGAGUCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA-GUAUCGAUUUUCGCUCCAUGCUUUUCCCCG ----------..(((((.(((((....)))))....))))).((((.((((((((((((..(....)..))))((((((....))))))-.....)))))))((.....))....))))) ( -41.20, z-score = -1.12, R) >droYak2.chr3L 11700162 109 + 24197627 ----------CCGCCUUUGCCCGGAUCCGGGGCUCCAGGGUCCGGGUGGAGAGCCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA-GUAUCGAUUUUCGCCCCGCUGUUUUCCCUG ----------..(((((..(((((((((((....)).)))))))))..)))(((.((((..(....)..)))).)))))..(((.((((-((..((.....))....))))))..))).. ( -46.10, z-score = -1.04, R) >droEre2.scaffold_4784 11654381 118 + 25762168 CCGCUCUGCGCCGCCCUCGCCCGGAUCCGGGGUUCCAGGGUCCGGGUGGCAAGCCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA-GUAUCGAUUUUCG-CCCGUUGUUUUCCCUG .((..((((...((((..((((((((((((....)).))))))))))((((.((.((((..(....)..)))).)))))).)))).)))-)...)).......-................ ( -50.30, z-score = -1.43, R) >droAna3.scaffold_13337 5937359 94 + 23293914 ----------GGGUCCGGGUCCGGGUCCGGGUCUC---AGUCCGGGUU-AAAGCCCAAGUCCGUAUAUUCGUGU-----------AACA-GUAUCGAUUUUCGUCCCCGUUUUGUUUUCA ----------((..(((....)))..))(((.(..---.....((((.-...))))(((((.((((........-----------....-)))).)))))..).)))............. ( -25.50, z-score = -0.65, R) >droMoj3.scaffold_6680 18514011 98 + 24764193 ------------------CUCCCCUGCCCAUCCCCUAUAUUCCAGGCGCUUUGCUAGUAUUUGUA----UGCGUGCUGCGCCAGCUACAUAUAUCGAUUUUCGUCCUGCUCUCUUUUUUU ------------------..........................(((((...((..((((....)----)))..)).)))))(((.........((.....))....))).......... ( -15.42, z-score = -0.48, R) >consensus __________CCGCCUUCGCCCGAAUCCGGGCUUCCAGGGUCCGGGUGGAGAGCCCGUAUCCGUAAGCCUGCGUGCUGCCUGGGCAGCA_GUAUCGAUUUUCGCCCCGUUCUUUUCCCCG ...................((((....))))......((((.(((((.....))))).)))).......(((.((((((....)))))).)))........................... (-18.63 = -20.11 + 1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:24 2011