| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,669,352 – 11,669,445 |
| Length | 93 |
| Max. P | 0.979195 |
| Location | 11,669,352 – 11,669,445 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 78.13 |
| Shannon entropy | 0.36389 |
| G+C content | 0.58410 |
| Mean single sequence MFE | -39.78 |
| Consensus MFE | -29.28 |
| Energy contribution | -29.20 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11669352 93 + 24543557 ---CAGGUGCAAUG-CCUUUUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUAGGGCAGAGCCACUGAUUUUAAGGGGCCUGGAGA------- ---(((((((..((-((((..((((((((.....(((((((......))))))))))))))).))))))..))..((.......))..)))))....------- ( -41.90, z-score = -4.04, R) >droSim1.chr3L 11039431 93 + 22553184 ---CAGGUGCAAUG-CCUUUUGAGGCGCGAUUACGGACCGGAAGUGCCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCCAAGGGGCUUGGCGG------- ---.........((-(((...((((((((.....(((((((......))))))))))).)))).)))))..((((..(((((....)))))))))..------- ( -41.00, z-score = -1.49, R) >droSec1.super_0 3855931 93 + 21120651 ---CAGGUGCAAUG-CCUUUUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCCAAGGGGCUUGGCGG------- ---.........((-(((...((((((((.....(((((((......)))))))))))))))..)))))..((((..(((((....)))))))))..------- ( -45.80, z-score = -3.62, R) >droEre2.scaffold_4784 11650906 93 + 25762168 ---CAGGUGCAAUG-CCUUCUGAGUCGCGAUUACGGACCGGAAGUACCAGGUCCCGCGACUUUUGGGCGGAGCCACUGGUCCUUGGGGGCUUGGAGG------- ---(((..((..((-(((...((((((((.....(((((((.....)).)))))))))))))..)))))..))..)))((((....)))).......------- ( -41.10, z-score = -1.93, R) >droAna3.scaffold_13337 5935407 104 + 23293914 CAACCGGUGCAUUGGCUUUUUGGUUUGCAAUUUUAGUCCGGAAGUUGUAAGUCCUGCGAAUGUUGGGCGGAGCCAUUGGUCCUUGGGGUGCUUGUUACUCAAAG .....((..((.(((((((.....((((((((((......))))))))))((((.((....)).))))))))))).))..))...(((((.....))))).... ( -29.10, z-score = 0.11, R) >consensus ___CAGGUGCAAUG_CCUUUUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCUAAGGGGCUUGGAGG_______ .....(((....((.(((...((((((((.....(((((((......)))))))))))))))..)))))..)))...(((((....)))))............. (-29.28 = -29.20 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:23 2011