| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,872,575 – 4,872,695 |
| Length | 120 |
| Max. P | 0.875059 |
| Location | 4,872,575 – 4,872,695 |
|---|---|
| Length | 120 |
| Sequences | 14 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.39776 |
| G+C content | 0.51429 |
| Mean single sequence MFE | -40.39 |
| Consensus MFE | -26.49 |
| Energy contribution | -26.01 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4872575 120 - 23011544 ACCUGCUUGUGCUGGUACCACAACUUUGGCACAAAUAUCAGACCCAAGGCGAAACUAUUCGUCAGCUGGGAGCGGAUGAACAGGGCCAGCAAGAUGGCGCUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))))........((((.((((((....))))))...))))..(((((((.(((.((((......)))).)))....)))..))))))))) ( -45.90, z-score = -2.52, R) >droPer1.super_1 3219959 120 + 10282868 ACCUGCUUGUGCUGAUACCACAAUUUUGGCACAAAUAUCAGACCCAGGGCAAAGCUGUUUGUCAGCUGGGAGCGCACGAAGAGGGCCAACAGUAUGGCGCUGGGACUCAUUUCCGGUAGG .(((((((((((..(..........)..))))).........(((((.((...((((((.(((..((..(......)..))..))).))))))...)).)))))..........)))))) ( -41.60, z-score = -1.11, R) >dp4.chr4_group3 6121336 120 + 11692001 ACCUGCUUGUGCUGAUACCACAAUUUUGGCACAAAUAUCAGACCCAGGGCAAAGCUGUUUGUCAGCUGGGAGCGCACGAAGAGGGCCAGCAGUAUGGCGCUGGGACUCAUUUCCGGUAGG .(((((((((((((((((((......)))......))))...(((((((((((....))))))..)))))))))))....(((..(((((........)))))..)))......)))))) ( -42.50, z-score = -0.92, R) >droAna3.scaffold_12943 2611952 120 - 5039921 ACCUGCUUGUGCUGAUACCACAACUUUGGCACAAAUAUCAGACCCAGGGCGAAGCUGUUGGUCAGCUGGGAGCGGACGAAGAGGGCCAGAAGAAUGGUGCUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))).........(((((.((.(..((.((((((.((((....))).)......)))))).))..).)).)))))..........)))))) ( -41.70, z-score = -0.70, R) >droEre2.scaffold_4929 4954593 120 - 26641161 ACCUGCUUGUGCUGAUACCACAACUUUGGCACAAAUAUCAGACCCAAGGCGAAACUAUUCGUCAGCUGGGAGCGGAUGAAUAGGGCCAGCAAGAUGGCGCUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))).........((((..((....(((((((((.((.....)).))))))))).((((......))))))))))..........)))))) ( -45.10, z-score = -2.77, R) >droYak2.chr2L 4883367 120 - 22324452 ACCUGCUUGUGCUGAUACCACAACUUUGGCACAAAUAUCAGACCCAAGGCGAAACUAUUCGUCAGCUGGGAGCGGAUGAACAGGGCCAGCAGGAUGGCACUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))))........((((.((((((....))))))...))))..(((((((.(((.((((......)))).)))....)))..))))))))) ( -43.80, z-score = -2.46, R) >droSec1.super_5 2967470 120 - 5866729 ACCUGCUUGUGCUGAUACCACAACUUUGGCACAAAUAUCAGACCCAAGGCGAAACUAUUCGUCAGCUGGGAGCGGAUGAACAGGGCCAGCAAGAUGGCGCUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))))........((((.((((((....))))))...))))..(((((((.(((.((((......)))).)))....)))..))))))))) ( -45.90, z-score = -2.96, R) >droSim1.chr2L 4742763 120 - 22036055 ACCUGCUUGUGCUGAUACCACAACUUUGGCACAAAUAUCAGACCCAAGGCGAAACUAUUCGUCAGCUGGGAGCGGAUGAACAGGGCCAGCAAGAUGGCGCUGGGACUCAUUUCCGGCAGG .(((((((((((..(..........)..))))))........((((.((((((....))))))...))))..(((((((.(((.((((......)))).)))....)))..))))))))) ( -45.90, z-score = -2.96, R) >droVir3.scaffold_13246 2291381 120 - 2672878 ACCUGCUUGUGUUGAUACCACAAUUUUGGCACAAAUAUCAAACCCAAGGCGAAGCUAUUUGUCAGCUGCGAGCGCACAAAAAGCGCCAACAAAAUGGCGCUGGGACUCAUUUCCGGCAAA ...(((((((((..(..........)..))))).........(((...(((.((((.......)))).....)))......(((((((......))))))))))..........)))).. ( -34.60, z-score = -1.06, R) >droMoj3.scaffold_6500 26399583 120 - 32352404 ACCUGCUUGUGCUGAUACCACAAUUUUGGCACAAAUAUCAAACCCAAGGCGAAGCUAUUCGUCAGCUGCGAGCGCACAAACAGCGCCAGCAAAAUGGCGCUGGGACUCAUUUCCGGCAAA ....((((((((((((((((......)))......))))........((((((....))))))))).))))))((.....((((((((......))))))))(((......))).))... ( -41.30, z-score = -2.47, R) >droGri2.scaffold_15126 4714122 120 + 8399593 ACCUGCUUGUGCUGAUACCACAAUUUUGGCACAAAUAUCAAACCCAAGGCGAGGCUAUUUGUCAGCUGCGAGCGCACAAAGAGCGCCAACAAAAUGGCGCUGGGACUCAUUUCCGGCAAA ....((((((((((((((((......)))..................(((...)))...))))))).))))))((......(((((((......)))))))((((.....)))).))... ( -36.50, z-score = -0.90, R) >droWil1.scaffold_180772 7224077 120 + 8906247 ACCUGCUUGUGCUGAUACCAUAAUUUUGGCACAAAUAUCAAACCCAAGGCGAAGCUAUUCGUUAGCUGGGAGCGUACAAAAAGUGCCAGCAAAAUGGCGCUGGGACUCAUUUCCGGCAGA ..((((((((((..(..........)..))))).........(((...((..(((((.....)))))....))........(((((((......))))))))))..........))))). ( -39.10, z-score = -1.81, R) >anoGam1.chrU 5086931 120 + 59568033 ACCUGUUUAUGCUGGUACCAGAGUUUGGGCAGAAAAAUCAAACCCAACGUCACGGUGUUGGUCAGCUGCGAGCGCACAAACAGCGCUAAGAACAGUGUAGACGGAUUAAACUCCUCCAAA ..((((((((((((...((((...))))((((....(((((..((........))..)))))...)))).(((((.......))))).....))))))))))))................ ( -35.40, z-score = -1.23, R) >triCas2.ChLG5 9548704 120 + 18847211 ACUUGCUUUUGCUGGUACCAAAAUUUCGGGAUGAAUACCAACAUCAAGGUCAUACUUGUCGACAACUGCGUUCGUAAGCAAUAUAUGAUUAAAACGAAGUCCGGAUGAAGUCCGGGAAGU (((.((....)).)))......((((((.((((........))))..(((((((.((((..(((((...))).))..))))..)))))))....))))))((((((...))))))..... ( -26.20, z-score = 0.17, R) >consensus ACCUGCUUGUGCUGAUACCACAAUUUUGGCACAAAUAUCAGACCCAAGGCGAAGCUAUUCGUCAGCUGGGAGCGCACGAACAGGGCCAGCAAAAUGGCGCUGGGACUCAUUUCCGGCAGG ....(((((((((((..........)))))))...............((((((....))))))......))))...........((((......))))(((((((.....)))))))... (-26.49 = -26.01 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:40 2011