| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,666,833 – 11,666,935 |
| Length | 102 |
| Max. P | 0.618903 |
| Location | 11,666,833 – 11,666,935 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.82 |
| Shannon entropy | 0.40649 |
| G+C content | 0.42955 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -14.77 |
| Energy contribution | -15.80 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11666833 102 + 24543557 UGCCGUCU--GCCCAUGGGCCAAGUUGUCUUGCAUUUUAAACAAAUGACAGCCCAUUAUUCCAGCUUAUGUGCAGAUGGCAAUUUUGUUUACACACACAUAAGU---------------- ((((((((--((.(((((((.....((..((((((((.....))))).)))..))........))))))).)))))))))).......................---------------- ( -30.62, z-score = -2.58, R) >droSim1.chr3L 11036889 106 + 22553184 UGCCGUCU--GCCCAUGGGCCAAGUUGUCUUGCAUUUUAAACAAAUGACAGCCCAUUAUUCCAGCUUAUGUGCAGACGGCAAUUUUGUUUACACAUACAUACAUAAGU------------ ((((((((--((.(((((((.....((..((((((((.....))))).)))..))........))))))).))))))))))...........................------------ ( -32.42, z-score = -3.36, R) >droSec1.super_0 3853431 106 + 21120651 UGCCGUCU--GCCCAUGGGCCAAGUUGUCUUGCAUUUUAAACAAAUGACAGCACAUUAUUCCAGCUUAUGUGCAGACUGCAAUUUUGUUUACACAUACAUACACAAGU------------ (((.((((--((.(((((((.....(((.((((((((.....))))).))).)))........))))))).)))))).)))..(((((.((........)).))))).------------ ( -27.62, z-score = -1.81, R) >droYak2.chr3L 11695241 108 + 24197627 GGCCUUCU--GCCCGUGGGCCAAGUUGUCUUGCAUUUUAAACAAACGACAGGCCAUUAUUCCAGCUUAUGUGCAGAUGGGAUUUUUGUUUACACAUCUACGAGCAUAAGU---------- (((((...--(((....)))...(((((.(((.........))))))))))))).........((((((((..(((((...............)))))....))))))))---------- ( -29.86, z-score = -1.25, R) >droEre2.scaffold_4784 11648417 118 + 25762168 GGCCGUCU--GCCCAAGGGCCAAGUUGUCUUGCAUUUUAAAAAAACGACAGCCCAUUAUUCCAGCUUAUGUGCAGACGGGAAUUUUGUUUACACAUACUCGUACUCUUACUCGUAUAAGU ..((((((--((....((((...(((((.((..........)).))))).)))).........((....)))))))))).................(((..(((........)))..))) ( -28.80, z-score = -1.28, R) >droAna3.scaffold_13337 5932864 96 + 23293914 UGCCGCCUCAGCCCUGGGGCAAAGUUGUCUUGCAUUUUAAACAAACGACAUUCCAUUAUUCGGGCUUACGGGUAGACGAGAACUUUUCUUAUACAC------------------------ .(((((((((....))))))...(((((.(((.........)))))))).............)))......(((...((((.....)))).)))..------------------------ ( -21.50, z-score = -0.43, R) >consensus UGCCGUCU__GCCCAUGGGCCAAGUUGUCUUGCAUUUUAAACAAACGACAGCCCAUUAUUCCAGCUUAUGUGCAGACGGCAAUUUUGUUUACACAUACAUAAACA__U____________ ..((((((..((.(((((((...((((((.................))))))...........))))))).))))))))......................................... (-14.77 = -15.80 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:21 2011