| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,666,171 – 11,666,236 |
| Length | 65 |
| Max. P | 0.667403 |
| Location | 11,666,171 – 11,666,236 |
|---|---|
| Length | 65 |
| Sequences | 7 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.44010 |
| G+C content | 0.42688 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -8.99 |
| Energy contribution | -9.24 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11666171 65 - 24543557 GAAUACACUCAC-UGUGCAUUCAUAAUUUCUACGCGCCGCCAGGUGAAUCAUUUAUGAGUUGCGCU ............-.((((((((((((........((((....))))......))))))).))))). ( -17.64, z-score = -2.10, R) >droAna3.scaffold_13337 5932244 56 - 23293914 ---------CAC-UCAGCAUUCAUAAUUUCUACGCUCUGCCAGGUGAAUAUUUUAUGAGGUGGGCU ---------..(-(((.(..((((((......((((......))))......))))))).)))).. ( -10.20, z-score = 0.07, R) >droEre2.scaffold_4784 11647784 65 - 25762168 GAAUACACUCAC-UGUGCAUUCAUAAUUUCUACGCUCCGCCAGGUGAAUCAUUUAUGAGUUGCGCU ............-.((((((((((((......((((......))))......))))))).))))). ( -14.70, z-score = -1.57, R) >droYak2.chr3L 11694557 65 - 24197627 GAAUACACUCAC-UGUGCAUUCAUAAUUUCUACGCUCCGCCAGGUGAAUCAAUUAUGAGUUGUGCU ............-.(..(((((((((((....((((......))))....))))))))).))..). ( -14.00, z-score = -1.28, R) >droSec1.super_0 3852799 65 - 21120651 GAAUACACUCAC-UGUGCAUUCAUAAUUUCUACGCGCCGCCAGGUGAAUCAUUUAUGAGUUGCGCU ............-.((((((((((((........((((....))))......))))))).))))). ( -17.64, z-score = -2.10, R) >droSim1.chr3L 11036226 65 - 22553184 GAAUACACUCAC-UGUGCAUUCAUAAUUUCUACGCGCCGCCAGGUGAAUCAUUUAUGAGUUGCGCU ............-.((((((((((((........((((....))))......))))))).))))). ( -17.64, z-score = -2.10, R) >droGri2.scaffold_15110 10775369 64 + 24565398 --GAACGUUCAUGCAUAUAGUUGUAAUGAGUGCGAUUUGCAUGCUACAUCUUUUAUGAGAUGCAUC --.......((((((...(((((((.....)))))))))))))...((((((....)))))).... ( -15.10, z-score = -0.61, R) >consensus GAAUACACUCAC_UGUGCAUUCAUAAUUUCUACGCUCCGCCAGGUGAAUCAUUUAUGAGUUGCGCU ..............((((((((((((......(((........)))......))))))).))))). ( -8.99 = -9.24 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:20 2011