| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,651,988 – 11,652,088 |
| Length | 100 |
| Max. P | 0.792152 |
| Location | 11,651,988 – 11,652,088 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.95 |
| Shannon entropy | 0.22522 |
| G+C content | 0.48841 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -25.07 |
| Energy contribution | -26.15 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11651988 100 + 24543557 ACAAAGCUGCUUAAAGUUUAAGUUCAGUUGGCUGCCA------GUGGCAGUGGAUGUAGAUGGCAGUCAUUAUGCCAAUUACUCGGAAUUGGAGCAGGGGGACGGA ......((((((........(((((.(((.((((((.------..)))))).)))((((.(((((.......))))).))))...))))).))))))(....)... ( -32.80, z-score = -2.06, R) >droSim1.chr3L 11021607 100 + 22553184 ACAAAGCUGCUUAAAAUUUAAGUUCAGUUGGCUGCCA------GUGGCAGUGGACGUAGAUGGCAGUCAUUAUGCCAAUUACUCGGAAGUGGAGCAGGGGGACGGA ......((((((...((((..(....(((.((((((.------..)))))).)))((((.(((((.......))))).)))).)..)))).))))))(....)... ( -34.60, z-score = -2.69, R) >droSec1.super_0 3838849 100 + 21120651 ACAAAGCUGCUUAAAGUUUAAGUUCAGUUGGCUGCCA------GUGGCAGUGGACGUAGAUGGCAGUCAUUAUGCCAAUUACUCGGAAGUGGAGCAGGGGGACGGA ......((((((....((..(((...(((.((((((.------..)))))).))).....(((((.......)))))...)))..))....))))))(....)... ( -34.00, z-score = -2.24, R) >droYak2.chr3L 11680468 99 + 24197627 ACAAAGCUGCUUAAAGUGUAAGUUCAGUUGGCUGUCA------AUGGCAGUGGAUGUAGAUGGCAGUCAUUAUGCCAAUUACUCGGAAGUGGAGCAGGGGGACGA- ......((((((........(.(((.(((.(((((..------...))))).)))((((.(((((.......))))).))))...))).).))))))(....)..- ( -28.80, z-score = -1.22, R) >droEre2.scaffold_4784 11634040 98 + 25762168 ACAAAGCUGCUUAAAGUUUAAGUUCAGUUGGCUGCCA------GUGGCACUGGACGUAGAUGGCAGUCAUUAUGCCAAUUACUCAGAAGUGGAGC-GGGGAGCGG- .(((....(((((.....)))))....)))(((.((.------((..((((.((.((((.(((((.......))))).))))))...))))..))-.)).)))..- ( -31.70, z-score = -1.28, R) >droAna3.scaffold_13337 5920276 105 + 23293914 GCAAAGCUGCUUAAAGUUUAAGUUCAAUUUGCUGCCACUGGCAGUAGCAGUGGACGUGGUGGGGAGUCAUUAUGCCAAUUACUCGGAAGUACUGCCAGGGUUUCG- (((((...(((((.....)))))....))))).(((.(((((((((....(((.((((((((....)))))))))))......(....)))))))))))))....- ( -37.10, z-score = -2.20, R) >consensus ACAAAGCUGCUUAAAGUUUAAGUUCAGUUGGCUGCCA______GUGGCAGUGGACGUAGAUGGCAGUCAUUAUGCCAAUUACUCGGAAGUGGAGCAGGGGGACGG_ ......((((((..............(((.(((((((.......))))))).)))((((.(((((.......))))).)))).........))))))(....)... (-25.07 = -26.15 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:16 2011