| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,645,674 – 11,645,738 |
| Length | 64 |
| Max. P | 0.517238 |
| Location | 11,645,674 – 11,645,738 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 53.03 |
| Shannon entropy | 0.84029 |
| G+C content | 0.38321 |
| Mean single sequence MFE | -9.62 |
| Consensus MFE | -3.72 |
| Energy contribution | -3.68 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11645674 64 + 24543557 CUAUGUGGAUAGAUUGAAUUUGGAGGAAUCAGUUCCGAAUGCAAUACAAGAAGAAGAAAUUUUA ((((....))))((((.((((((((.......)))))))).))))......((((....)))). ( -10.50, z-score = -1.08, R) >droSim1.chr3L 11015446 52 + 22553184 CAAUGUGGAGAGAUUGAGUUUGGAGAACUCAGUGCAAAAUGC---AGACAUUUCA--------- .(((((......(((((((((...)))))))))((.....))---..)))))...--------- ( -10.90, z-score = -0.77, R) >droSec1.super_0 3832768 52 + 21120651 CAAUGUGGAGAGAUUGAGUUUGGAGAACUCAGUGCAAAAUGC---AGACAUUUCA--------- .(((((......(((((((((...)))))))))((.....))---..)))))...--------- ( -10.90, z-score = -0.77, R) >droYak2.chr3L 11674073 64 + 24197627 CAAUGUAAAUAGAUUGAAUUUGGAGGACACAACUCCGAGUGCCCCACAGGAACCAGAGAGUCCA ((((.(....).)))).((((((((.......))))))))........(((.(......)))). ( -11.60, z-score = -0.30, R) >dp4.chr3 19607402 61 + 19779522 UCGUGCGAGAAGACGAGAUC---AAGAUCUGAUUCAAACUUAAACAAAACAAAAAAAAACUAUA ((((.(.....)))))((((---(.....))))).............................. ( -4.20, z-score = 0.26, R) >consensus CAAUGUGGAGAGAUUGAAUUUGGAGGACUCAGUUCAAAAUGC___ACAAAAAUCA_A_A_U__A ............((((((((.....))))))))............................... ( -3.72 = -3.68 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:13 2011