Locus 7031

Sequence ID	dm3.chr3L
Location	11,612,414 – 11,612,466
Length	52
Max. P	0.874420

overview

Window 1

Location	11,612,414 – 11,612,466
Length	52
Sequences	6
Columns	55
Reading direction	forward
Mean pairwise identity	71.95
Shannon entropy	0.53480
G+C content	0.55280
Mean single sequence MFE	-15.95
Consensus MFE	-12.05
Energy contribution	-12.83
Covariance contribution	0.79
Combinations/Pair	1.56
Mean z-score	-0.77
Structure conservation index	0.76
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.02
SVM RNA-class probability	0.874420
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11612414 52 + 24543557
UGACUGACUUCCACAACGGGGUCAGAUGAGGUGGUGGAUUGGCCACCAUCGG---
...((((((((......))))))))....((((((((.....))))))))..--- ( -23.50, z-score =  -2.99, R)
>droSim1.chr3L 10984309 52 + 22553184
UGACUGACUUCCACAACGGGGUCAGAUGAGGUGGUGGAUUGGCCAGCAUCGG---
...((((((((......))))))))....((((.(((.....))).))))..--- ( -19.00, z-score =  -1.79, R)
>droYak2.chr3L 11640881 52 + 24197627
UGAUUGACUUCCACAACCGGGUCAGAUGAGGUGGUGGACUGACCCUCAGGGG---
.........(((((.(((...........))).)))))....(((....)))--- ( -13.50, z-score =   1.18, R)
>droSec1.super_0 3798300 52 + 21120651
UGACUGACUUCCACAACGGGGUCAGAUGAGGUGGUAGAUUGGCCAGCAUCGG---
...((((((((......)))))))).((((.((((......)))).).))).--- ( -16.80, z-score =  -1.38, R)
>droAna3.scaffold_13337 5884536 52 + 23293914
GAGGUUACCUCUACAACGGGAUCAGAAGCGGUUGUGGAUUGUCCAUCAUCCG---
((((.....((((((((.(.........).))))))))....)).)).....--- ( -12.10, z-score =   0.06, R)
>dp4.chrXR_group6 3235796 55 - 13314419
UCACUGGCAUCGACAACGGGCUCAGACUCUGAAGCAGACUGAUUGCUUUCAUCGU
...(((((.(((....))))).))).....(((((((.....)))))))...... ( -10.80, z-score =   0.28, R)
>consensus
UGACUGACUUCCACAACGGGGUCAGAUGAGGUGGUGGAUUGGCCACCAUCGG___
...((((((((......))))))))....((((((((.....))))))))..... (-12.05 = -12.83 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:09 2011