| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,600,278 – 11,600,368 |
| Length | 90 |
| Max. P | 0.716420 |
| Location | 11,600,278 – 11,600,368 |
|---|---|
| Length | 90 |
| Sequences | 15 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.56584 |
| G+C content | 0.51985 |
| Mean single sequence MFE | -30.01 |
| Consensus MFE | -14.07 |
| Energy contribution | -13.66 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11600278 90 - 24543557 ACUACAAUGCUAUUCUGGAUCCCUACAACGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC---CGAGAUCCAAACCAAAGAGG----------- ...............(((((((((...((((((....)))))))))..((((((((........))))))---)).))))))...........----------- ( -31.70, z-score = -1.97, R) >droSim1.chr3L 10975968 90 - 22553184 ACUACAAUGCUAUUUUAGAUCCCUACAACGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC---CGAUAUCCAAACCAAAGAGG----------- .....................(((...((((((....))))))(((..((((((((........))))))---))...))).........)))----------- ( -26.30, z-score = -0.93, R) >droSec1.super_0 3789453 90 - 21120651 ACUACAAUGCUAUUUUGGAUCCCUACAACGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC---CGAUAUCCAAACCAAAGAGG----------- .............((((((((((....((((((....)))))))))..((((((((........))))))---))..))))))).........----------- ( -30.80, z-score = -1.95, R) >droYak2.chr3L 11631615 90 - 24197627 ACUACAAUGCUAUUUUGGAUCCCUACAACGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC---GGAGAUCCAAACCAAAGAGG----------- .............((((((((((..(.((((((....)))))).).....((((((........))))))---)).)))))))).........----------- ( -32.00, z-score = -1.95, R) >droEre2.scaffold_4784 11587187 90 - 25762168 ACUACAAUGCUAUUUUGGAUCCCUACAACGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC---CGAGAUCCAAACCAAAGAGG----------- .............(((((((((((...((((((....)))))))))..((((((((........))))))---)).)))))))).........----------- ( -33.30, z-score = -2.58, R) >droAna3.scaffold_13337 5875036 90 - 23293914 AUUACAAUGCUAUAUUGGAUCCAUACAAUGCCACCGUUGGUGUGGGCCUCGGCUUGGCUGGUUACAAGCC---CGAGUUUCAGACCAAGGAGG----------- ............(((((........)))))((.((.(((((.(((..(((((((((........)))).)---))))..))).))))))).))----------- ( -30.60, z-score = -1.47, R) >dp4.chrXR_group6 3225540 90 + 13314419 ACUACAAUGCCAUCUUGGACCCCUACAAUGCCUCCGUUGGCGUUGGCCUGGGCUUGGCUGGCUACAAGCC---CCAGGUUCAAACUAAAGAGG----------- ....((((((((...((((...(......)..)))).))))))))(((((((((((........)))).)---))))))..............----------- ( -32.50, z-score = -1.49, R) >droPer1.super_20 1851139 90 + 1872136 ACUACAAUGCCAUCUUGGACCCCUACAAUGCCUCCGUUGGCGUUGGCCUGGGCUUGGCUGGCUACAAGCC---CCAGGUUCAAACUAAAGAGG----------- ....((((((((...((((...(......)..)))).))))))))(((((((((((........)))).)---))))))..............----------- ( -32.50, z-score = -1.49, R) >droWil1.scaffold_180698 2099374 90 - 11422946 AUUACAAUGCAAUUUUGGAUCCAUAUAAUGCCACAGUGGGUGUGGGUCUGGGCUUGGCUGGUUACAAGCC---CGCCUUGCAGACCAAGGAGG----------- ................((((((((((....((.....))))))))))))(((((((........))))))---).(((((.....)))))...----------- ( -30.80, z-score = -0.77, R) >droVir3.scaffold_13049 23808076 90 - 25233164 ACUAUAAUGCGAUACUGGAUCCUUACAAUGCCACUGUGGGCGUCGGCUUGGGUUUGGCUGGUUACAAGCC---CGAGUUUCAGACCAAGGAGG----------- ...................(((((.....(((......)))(((.(((((((((((........))))))---)))))....))).)))))..----------- ( -29.20, z-score = -1.03, R) >droMoj3.scaffold_6680 18427420 90 - 24764193 ACUACAAUGCUAUACUGGAUCCGUAUAAUGCCACCGUGGGCGUCGGCUUGGGCUUGGCUGGUUACAAGCC---UGAGUUUCAGACCAAGGAGG----------- ..........(((((.(....))))))...((.((.(((.(...((((..((((((........))))))---..))))...).))).)).))----------- ( -28.10, z-score = -0.29, R) >droGri2.scaffold_15110 10698617 90 + 24565398 ACUACAAUGCUAUACUGGAUCCGUACAAUGCCACUGUCGGAGUCGGCUUGGGCUUGGCUGGUUACAAGCC---CGAGAUUCAGACCAAGGAGG----------- ..............(((((((........((((((.....))).)))(((((((((........))))))---))))))))))..........----------- ( -29.10, z-score = -1.11, R) >anoGam1.chr2R 15150359 97 - 62725911 ACUACAACGCCAUCGUCAACCCGUACAAAGCGUCCGUCGGCGUAGGGCUCGGCCUGGCCGGCUACCGGCCGGACGAGCUCGACAUCAAGCAGGUGGC------- ........(((((((((.((.(((.....)))...)).)))((.(((((((..((((((((...)))))))).))))))).))........))))))------- ( -43.40, z-score = -2.22, R) >apiMel3.GroupUn 16107770 102 - 399230636 AUUAUAAUAGUAUAGUAGAUCCAUAUAAAGCUACGAUUGGUGUUGGUCUUGGUUUACCAUCAUAUAAUCC--UGGAGCUGCAGAUCGACAACUUAUAUCAGAUG ..............((((............))))(((.((((((((((((((((..(((...........--)))))))).)))))))).)))...)))..... ( -18.00, z-score = 0.76, R) >triCas2.chrUn_49 296137 102 + 463132 AUUAUAAUUCUAUUAGUAACCCAAAUAAACCUUCAGUAGGGGUAGGCUUAGGUUUACCCAAUUACCAUACCGUUGAUAUUGACAGAAGAAGGUUCAAUGACG-- ...........................(((((((.(((.((((((((....))))))))...)))......(((......)))....)))))))........-- ( -21.90, z-score = -1.10, R) >consensus ACUACAAUGCUAUUUUGGAUCCCUACAAUGCCACCGUUGGCGUGGGCCUGGGCUUGGCUGGAUACAAGCC___CGAGAUUCAAACCAAAGAGG___________ ..............(((((......(.(((((......))))).).....((((((........))))))........)))))..................... (-14.07 = -13.66 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:08 2011