| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,865,933 – 4,866,026 |
| Length | 93 |
| Max. P | 0.655283 |
| Location | 4,865,933 – 4,866,026 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.41 |
| Shannon entropy | 0.51033 |
| G+C content | 0.64615 |
| Mean single sequence MFE | -33.32 |
| Consensus MFE | -19.99 |
| Energy contribution | -19.96 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655283 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 4865933 93 + 23011544 GUCGGGCGGAGCGUUUUCGAUUGCGUAAGCGCAGCGCCACGCCCACAACGCCCGCCACUGCAGCAGGAGUCACUUCACUAGAUGUUGCAACUG----- (.((((((..((((...((.(((((....)))))))..))))......)))))).)..(((((((..(((......)))...)))))))....----- ( -34.80, z-score = -1.41, R) >droSim1.chr2L 4736209 78 + 22036055 GUCGGGCGGAGCGUUUUUGGUUGCGUAAGCGCAGCGCCACGCCCACAACGCCCG---------------UCACUCCACUGGAUGUUGCAACUG----- ...(((((..((((.......((((....))))))))..))))).(((((((.(---------------(......)).)).)))))......----- ( -28.31, z-score = -0.37, R) >droSec1.super_5 2960902 78 + 5866729 GUCGGGCGGAGCGUUUUCGGUUGCGUAAGCGCAGCGCCACGCCCACAACGCCCG---------------UCACUCCACUGGAUGUUGCAACUG----- ...(((((..(((....).((((((....))))))))..))))).(((((((.(---------------(......)).)).)))))......----- ( -29.10, z-score = -0.59, R) >droYak2.chr2L 4876411 90 + 22324452 GUCGGGCGGAGCGUUUUCGAUUGCGUAAGCGCAGUGCCACGCCCACAACGCCCGCCACGACGACAG---CCACUCCACUGGAUGUUGCAACUG----- (((((((((.(((((......((((....))))(((.......))))))))))))).))))((((.---(((......))).)))).......----- ( -35.50, z-score = -1.95, R) >droEre2.scaffold_4929 4947591 98 + 26641161 GUCGGGCGGAGCGCUUUCGAUUGCGUAAGCGCAGCGCCACGCCCACAACGCCCAGCAGUGCGGCAGCUGCCACGGCGGCAGCCACUCCACUGGAUGUU ((.(((((..(((((.......(((....))))))))..)))))))((((.((((..(.(.(((.(((((....))))).))).).)..)))).)))) ( -47.51, z-score = -1.90, R) >droAna3.scaffold_12943 2605370 90 + 5039921 GUCGAGCGGAGCGCUUCCGUUUGCGAAAGCGCAGCGCCACCCCCACAACGCCGGCAACUGCCACCACAGCAACACCAGGUCCCAGCGCAG-------- ...((((((((...))))))))((....))...((((...............(((....)))(((............)))....))))..-------- ( -24.70, z-score = 0.35, R) >consensus GUCGGGCGGAGCGUUUUCGAUUGCGUAAGCGCAGCGCCACGCCCACAACGCCCGCCACUGC__CAG___CCACUCCACUGGAUGUUGCAACUG_____ ((.(((((..((((.......((((....))))))))..))))))).................................................... (-19.99 = -19.96 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:39 2011