| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,572,876 – 11,572,994 |
| Length | 118 |
| Max. P | 0.906715 |
| Location | 11,572,876 – 11,572,994 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 69.09 |
| Shannon entropy | 0.55090 |
| G+C content | 0.42449 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -16.14 |
| Energy contribution | -15.99 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11572876 118 + 24543557 UCAAUUUGCGGUUUUCCUGCGGGUGACAAUAACUUUAGUCUUGUGGGCAUGUGUUGAAUUGGUAGCUGAAGCCGCCAAUUGGAUGGCCA-AGGCGAUAACGAGGAACACGUAGAGGAAC ....((((((...(((((.(((....)..........(((((...(((....(((.((((((..((....))..)))))).))).))))-)))).....)))))))..))))))..... ( -36.70, z-score = -1.58, R) >droSim1.chr3L 10948321 118 + 22553184 UUAAUUUGCGGUUUUCCUGCGGGUCACGAUAACUUUAGUCUUGUGGGUAUGUGUUGAAUUGGUAGCUGAAGCUGCCAAUUGGAUGGCCA-AGGCGAUAACGAGGAAUACGUAGAGGAAC ....((((((...(((((.((...(((((..((....)).)))))(((....(((.((((((((((....)))))))))).))).))).-.........)))))))..))))))..... ( -37.20, z-score = -2.42, R) >droSec1.super_0 3763945 118 + 21120651 UUAAUUUGCGGUUUUCCUGCGGGUCACAAUAACUUUAGUCUUGUGGGAAUGUGUUGAAUUGGUAGCUGAAGCUGCCUAUUGGAUGGCCA-AGGCGAUAACGAGGAAUACGUAGAGGAAC ....((((((...(((((.((..((((((..((....)).))))))......(((.(((.((((((....)))))).))).))).((..-..)).....)))))))..))))))..... ( -32.50, z-score = -1.11, R) >droYak2.chr3L 11601357 118 + 24197627 UUAAUGUGCGGUUUUUCUGCGGGUCACGACUACUUUAGUCUUGUGGGUACUAGUUGUAUUGGAUGCUGAAGCCGCCAAUUGGAUGGCCA-AGGCGAUAACGAGGAAUACGUAGAGGAAC ..........(((((((((((..((.((....(((((((....(.(((((.....))))).)..))))))).((((..((((....)))-)))))....))..))...))))))))))) ( -34.70, z-score = -1.20, R) >droWil1.scaffold_181155 2256388 93 - 3442787 -----------UUUUUCCUUGGAU----AUUUUGUUGG-CGAAUAAAUUUGAGUUUUUUUUAAUAUUUAUUGCACUUAUUACGUGAUUUCACGUGAUUUCAAAAAGCAU---------- -----------.......(((((.----.........(-(.((((((((((((.....))))).)))))))))....((((((((....))))))))))))).......---------- ( -16.50, z-score = -1.45, R) >consensus UUAAUUUGCGGUUUUCCUGCGGGUCACAAUAACUUUAGUCUUGUGGGUAUGUGUUGAAUUGGUAGCUGAAGCCGCCAAUUGGAUGGCCA_AGGCGAUAACGAGGAAUACGUAGAGGAAC ....((((((...(((((.((...........(((((((.........................))))))).((((...(((....)))..))))....)))))))..))))))..... (-16.14 = -15.99 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:19:02 2011