| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,555,500 – 11,555,594 |
| Length | 94 |
| Max. P | 0.805664 |
| Location | 11,555,500 – 11,555,594 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.47582 |
| G+C content | 0.42128 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -11.97 |
| Energy contribution | -12.78 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11555500 94 + 24543557 ------AACUGUUGGUGAUAGAUCACCUUAAUAUCGUUUUAACAACUGCUGUUGUGAGCCUGCAGCCCUGGUUGUUGACAAUCAGCAGCUUGGUUGCAGU ------.......(((((....)))))........((((..(((((....)))))))))((((((((..((((((((.....)))))))).)))))))). ( -35.30, z-score = -3.59, R) >droAna3.scaffold_13337 5842485 100 + 23293914 AAUUAGUAUUAAGAGUUAUAUGUAUCGCUUUUAACAGCCACCGAACGGCUGUUAUCUUUAUGCAGCCCUGGUUGUUGACUAUCAGCUGUUCGGUAACAGA ........((((((((.((....)).)))))))).....((((((((((((.((((.....(((((....))))).)).)).))))))))))))...... ( -30.90, z-score = -3.25, R) >droEre2.scaffold_4784 11556269 94 + 25762168 ------AACUGUUGUUGACAGAUCACUUUAAUGUCGCUUUAAUAACUGCUGUUUUGAGCCUGCAGCCCUGGUUGUUGACAAUCAGCUGGGCGAAUGCAGA ------....((((((((.((...((......))..)))))))))).(((......)))(((((((((.(((((........)))))))))...))))). ( -25.80, z-score = -0.75, R) >droYak2.chr3L 11590438 94 + 24197627 ------AACUGUUGCUGAUAUAUCGGCUUAAGUUCGUUUUAUUAACUGAUGUUUUCUGCCUGCAGCCCUGGUUGUUGACAAUCAGCUGUGUGGCUGCAGA ------.......((.((.(((((((.((((..........)))))))))))..)).))(((((((((((((((....)))))))......)))))))). ( -30.90, z-score = -3.06, R) >droSec1.super_0 3755577 94 + 21120651 ------AACUGUUGGUUAUAGAUCACCUUAACAUCGUUUUAAGAACUGCUUUUUUGAGCUUGCAGCCCUGGUUGUUGACAAUCAGCUGCUUGGAUGCAGA ------..(((..(((........)))....((((............((((....))))..(((((..((((((....)))))))))))...))))))). ( -23.20, z-score = -0.53, R) >droSim1.chr3L 10938480 94 + 22553184 ------AACUGUUUGUUAUAAAUGACCUUAAUAUCGUUAUAAGAACUGCUUUUUUGAGCUUGCAGCCCUGGUUGUUGACAAUCAGCUGGUUGGAUGCAGA ------..((((((.((((((.(((........))))))))).))..((((....))))...((((((((((((....)))))))..)))))...)))). ( -22.80, z-score = -1.21, R) >consensus ______AACUGUUGGUGAUAGAUCACCUUAAUAUCGUUUUAAGAACUGCUGUUUUGAGCCUGCAGCCCUGGUUGUUGACAAUCAGCUGCUUGGAUGCAGA ........((((.(((((....)))))..................................(((((..((((((....)))))))))))......)))). (-11.97 = -12.78 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:58 2011