| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,544,484 – 11,544,634 |
| Length | 150 |
| Max. P | 0.559300 |
| Location | 11,544,484 – 11,544,634 |
|---|---|
| Length | 150 |
| Sequences | 5 |
| Columns | 153 |
| Reading direction | reverse |
| Mean pairwise identity | 76.05 |
| Shannon entropy | 0.42562 |
| G+C content | 0.33906 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -13.30 |
| Energy contribution | -14.50 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11544484 150 - 24543557 --AUAUAUAAUGGUAUAGAAAAGUAUCUAUGUACUAUUUGCGAUUGAACGUUUUGCCCCCGUUAUGAAACAC-UUUUCUCACGGUAUUUCCCCAUUAAGCAAUUCCAGCAAAAUCGUAUAGAUACUAAUUUAGUAACUCAGCAAUCGCAUUUA --......(((((((((((......)))..))))))))((((((((.(((((((((..((((...((((...-.))))..))))............((....))...)))))).)))..((.(((((...))))).))...)))))))).... ( -29.40, z-score = -2.10, R) >droSim1.chr3L 10928466 139 - 22553184 ------------AUAUUUAAUAGUAUCUAUGUACCUUUUGCUAUUGAACGUUUU-CCCCCGUUAUGAAACAC-UUUUCUCACGGUUUUUCCCCAUUAAGCAAUUCCAGCAAAAUCGUAUAGAUACUAAUUUAGUAACUAAGCAAGCGCAUUUA ------------........(((((((((((....(((((((((((((((....-....))))..((((.((-(........))).)))).........))))...)))))))...))))))))))).............((....))..... ( -24.10, z-score = -2.44, R) >droSec1.super_0 3744315 139 - 21120651 ------------AUAUUUAAUAGUAUCUACGUACCUUUUGCUAUUGAACGUUUU-CCCCCGUUAUGAUUAAG-AUUAAAUGGGGUAUUUCCCCAUUAAGCAAUUCCAGCAAAAUCGUAUAGAUACUAAUUUAGUAACUAGGCAAUCGCAUUUA ------------........((((((((..((((.(((((((((((((((....-....)))).........-....(((((((.....)))))))...))))...)))))))..)))))))))))).............((....))..... ( -31.30, z-score = -2.77, R) >droYak2.chr3L 11578820 138 - 24197627 AUUUAGUAUAGAAAAGUAACUAGCUACUAUGUACUUUUUGCUAUUGAGCGUUUUUUCCCCGCUAUGAAAUAC-UUUUCUCACGGUAUUUCCCCAUUGAGCAAUUCCAGCGAGAUCGUAUAGAUACAAUUUCAGUAGUUA-------------- ....................((((((((..((.....(((((..((((((.........))))..(((((((-(........))))))))..))...))))).....))(((((.(((....))).)))))))))))))-------------- ( -27.90, z-score = -1.76, R) >droEre2.scaffold_4784 11544620 153 - 25762168 AUUUAGUAUAGAAAAGUAACUAGAUUCUAUGUACUUUGUGCAAUUGAGCGUUUUCCCCCCGUUAUGAAAUACAUUUUCUCACGGUAUUUCCCCAUUAAGCAAUUCCAGCGGAAUCGUAUAGAUACAAUUUUAGUAACUCAGCAGUCGCAUUGA ..............(((.((((((.(((((((((...))))......(((..((((..((((...((((.....))))..))))..............((.......)))))).))))))))......)))))).)))..((....))..... ( -24.50, z-score = 0.15, R) >consensus ___UA____A__AUAUUAAAUAGUAUCUAUGUACUUUUUGCUAUUGAACGUUUU_CCCCCGUUAUGAAACAC_UUUUCUCACGGUAUUUCCCCAUUAAGCAAUUCCAGCAAAAUCGUAUAGAUACUAAUUUAGUAACUAAGCAAUCGCAUUUA ......................(((((((((....(((((((((((((((.........))))...................((.......))......))))...)))))))...)))))))))............................ (-13.30 = -14.50 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:57 2011