Locus 7020

Sequence ID dm3.chr3L
Location 11,539,024 – 11,539,165
Length 141
Max. P 0.640073
window9664

overview

Window 4

Location 11,539,024 – 11,539,165
Length 141
Sequences 3
Columns 141
Reading direction forward
Mean pairwise identity 89.19
Shannon entropy 0.14328
G+C content 0.52815
Mean single sequence MFE -45.23
Consensus MFE -40.54
Energy contribution -40.10
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.34
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.31
SVM RNA-class probability 0.640073
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11539024 141 + 24543557
AUGCCCCUCGCCGAUUCUUUGGUUUUGGCCCUCGCUCGAAAGGGUUUCAACUAAGGGGGCCUUCAGUCGAAUACUCACUUGCUGGGAUUGCUGAGUAUGCGAUACUCGGUACUUGAAACUUGGUACUUGGUACUCAGUACU
..((((((.(((((..(....)..)))))....((((....)))).........)))))).(((((.(((........))))))))..((((((((((.((.....))(((((........)))))...)))))))))).. ( -45.50, z-score =  -1.45, R)
>droSim1.chr3L 10923070 125 + 22553184
-UGCCCCUCGCCGAUUCUUUGGUUUUGGCCCUCGCUCGAAAGGGUUUCAACUG-GGGGGCCUUCAGUCGGAUACUCACUUGCUGGGAUUGCUGAGUAUGCGGUACUCGGUACUUGGAACUCAGUACU--------------
-.((((((((((((..(....)..)))))....((((....)))).......)-)))))).......((.(((((((...((.......))))))))).))(((((.(((.......))).))))).-------------- ( -45.10, z-score =  -1.28, R)
>droSec1.super_0 3738325 125 + 21120651
-UGCCCCUCGCCGAUUCUUUGGUUUUGGCCCUCGCUCGAAAGGGUUUCAACUG-GGGGGCCUUCAGUCGGAUACUCACUUGCUGGGAUUGCUGAGUAUGCGGUACUCGGUACUUGGAACUUGGUACU--------------
-.((((((((((((..(....)..)))))....((((....)))).......)-)))))).......((.(((((((...((.......))))))))).))(((((.(((.......))).))))).-------------- ( -45.10, z-score =  -1.28, R)
>consensus
_UGCCCCUCGCCGAUUCUUUGGUUUUGGCCCUCGCUCGAAAGGGUUUCAACUG_GGGGGCCUUCAGUCGGAUACUCACUUGCUGGGAUUGCUGAGUAUGCGGUACUCGGUACUUGGAACUUGGUACU______________
..((((((.(((((..(....)..)))))....((((....)))).........))))))......(((.(((((((...((.......))))))))).))).....((((((........)))))).............. (-40.54 = -40.10 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:56 2011