| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,528,915 – 11,528,972 |
| Length | 57 |
| Max. P | 0.969451 |
| Location | 11,528,915 – 11,528,972 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 92.94 |
| Shannon entropy | 0.09666 |
| G+C content | 0.37270 |
| Mean single sequence MFE | -13.47 |
| Consensus MFE | -11.92 |
| Energy contribution | -12.03 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11528915 57 + 24543557 CUAUUUAAAGCCACAUGGCUUUAGUCUGUAGUCUCUAACACAGGGAAGUAAAUUCCA ....((((((((....)))))))).((((.((.....))))))((((.....)))). ( -15.70, z-score = -2.95, R) >droSim1.chr3L 10911661 56 + 22553184 CUAUUUAAAGCCACACAGCUUUAGUCUGUAGUCUCUA-UACAGGGAAGUAAAUUCCA ....(((((((......))))))).(((((.......-)))))((((.....)))). ( -13.20, z-score = -2.54, R) >droSec1.super_0 3728537 56 + 21120651 CUAUUUAAAGUCGCAUAGCUUUAGUCUGUAGUCUCUA-UACAGGGAAGUAAAUUCCA ....(((((((......))))))).(((((.......-)))))((((.....)))). ( -11.50, z-score = -2.01, R) >consensus CUAUUUAAAGCCACAUAGCUUUAGUCUGUAGUCUCUA_UACAGGGAAGUAAAUUCCA ....(((((((......))))))).(((((........)))))((((.....)))). (-11.92 = -12.03 + 0.11)
| Location | 11,528,915 – 11,528,972 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 92.94 |
| Shannon entropy | 0.09666 |
| G+C content | 0.37270 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -10.71 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11528915 57 - 24543557 UGGAAUUUACUUCCCUGUGUUAGAGACUACAGACUAAAGCCAUGUGGCUUUAAAUAG .((((.....))))(((((........)))))..(((((((....)))))))..... ( -14.10, z-score = -2.18, R) >droSim1.chr3L 10911661 56 - 22553184 UGGAAUUUACUUCCCUGUA-UAGAGACUACAGACUAAAGCUGUGUGGCUUUAAAUAG .((((.....))))((((.-(((((.(((((.((....).).)))))))))).)))) ( -12.40, z-score = -1.57, R) >droSec1.super_0 3728537 56 - 21120651 UGGAAUUUACUUCCCUGUA-UAGAGACUACAGACUAAAGCUAUGCGACUUUAAAUAG .((((.....))))(((((-.......)))))..(((((........)))))..... ( -6.70, z-score = -0.40, R) >consensus UGGAAUUUACUUCCCUGUA_UAGAGACUACAGACUAAAGCUAUGUGGCUUUAAAUAG .((((.....))))(((((........)))))..(((((((....)))))))..... (-10.71 = -10.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:53 2011