| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,525,165 – 11,525,260 |
| Length | 95 |
| Max. P | 0.691818 |
| Location | 11,525,165 – 11,525,260 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.29730 |
| G+C content | 0.46017 |
| Mean single sequence MFE | -20.36 |
| Consensus MFE | -12.61 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11525165 95 - 24543557 GAGCCAGAGUCAGACCACAAUAAUAUACAUAGAUACAU----AUAUUUUGUGGGAGACAGACACCAAGACGGAGCUAGUUAGAAAGGCUGUGGUUAUGG .(((((.((((...((((((.((((((..........)----)))))))))))..(((((.(.((.....)).))).))).....)))).))))).... ( -24.50, z-score = -3.11, R) >droEre2.scaffold_4784 11525541 87 - 25762168 GAGCCGGAGUCAGACCACAACAGUGUACAU------------AUAUUUUGCGGGAGACAGACCCCAAGACGGAGCUAGUUAGACAGGCCAUGCUUAUGG ((((.((.(((.((((((....))).....------------...(((((.(((.......))))))))........))).)))...))..)))).... ( -17.50, z-score = 0.33, R) >droYak2.chr3L 11559230 76 - 24197627 GAGCCAGAGUCAGACCACAAUA---UACAU------------AUAUUUUGAGGGAGACAGAGCCCAAGACGGAGCUAGUUAGACAGGCCAU-------- (.(((...(((...((.(((.(---((...------------.))).))).))..)))..(((((.....)).))).........))))..-------- ( -16.60, z-score = -3.08, R) >droSec1.super_0 3724809 99 - 21120651 GAGCCAGAGUCAGACCACAACAAUAUACAUAGAUACAUAGAUAUAUUUUGUGGGAGACAGACCCCAAGACGAAGCUAGUUAGACAGGCCGUGGUUAUGG .((((...(((...((((((.((((((..((......))..))))))))))))..)))..........(((..(((.(.....).)))))))))).... ( -21.60, z-score = -2.13, R) >droSim1.chr3L 10907950 99 - 22553184 GAGCCAGAGUCAGACCACAACAAUAUACAUAGAUACAUAGAUAUAUUUUGUGGGAGACAGACCCCAAGACGAAGCUAGUUAGACAGGCCGUGGUUAUGG .((((...(((...((((((.((((((..((......))..))))))))))))..)))..........(((..(((.(.....).)))))))))).... ( -21.60, z-score = -2.13, R) >consensus GAGCCAGAGUCAGACCACAACAAUAUACAUAGAUACAU____AUAUUUUGUGGGAGACAGACCCCAAGACGGAGCUAGUUAGACAGGCCGUGGUUAUGG ..(((...(((...((((((.(((((................)))))))))))..))).........(((.......))).....)))........... (-12.61 = -13.37 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:50 2011