| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,486,706 – 11,486,759 |
| Length | 53 |
| Max. P | 0.785086 |
| Location | 11,486,706 – 11,486,759 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 88.46 |
| Shannon entropy | 0.25640 |
| G+C content | 0.56431 |
| Mean single sequence MFE | -15.63 |
| Consensus MFE | -10.21 |
| Energy contribution | -10.32 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11486706 53 + 24543557 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGACCCCGCCAC ((((((((......)))))))).......((((...((....))...)))).. ( -14.60, z-score = -2.19, R) >droSim1.chr3L 10881752 53 + 22553184 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGACCCCGGCAC ((((((((......))))))))..((((.((((........).)))..)))). ( -17.50, z-score = -2.37, R) >droSec1.super_0 3695039 53 + 21120651 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGACCCCGGCAC ((((((((......))))))))..((((.((((........).)))..)))). ( -17.50, z-score = -2.37, R) >droYak2.chr3L 11527776 53 + 24197627 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGUCCCCACCAC ((((((((......)))))))).......((((..............)))).. ( -14.64, z-score = -2.41, R) >droEre2.scaffold_4784 11497189 53 + 25762168 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGCCCCCGCCAC ((((((((......))))))))((.((..((((........))))...)).)) ( -15.80, z-score = -2.66, R) >droAna3.scaffold_13337 5773522 52 + 23293914 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCUCG-CCCCAUUGC ((((((((......)))))))).......(((((......)))-))....... ( -16.00, z-score = -2.62, R) >droVir3.scaffold_13049 1943583 51 - 25233164 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCAGUCGACCCCUUC-- ((((((((......)))))))).......((((((....))).))).....-- ( -14.10, z-score = -1.81, R) >droMoj3.scaffold_6680 6863499 50 - 24764193 -ACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCAAGCCACUCCCCC-- -(((((((......)))))))........(((........)))........-- ( -11.90, z-score = -0.94, R) >droGri2.scaffold_15110 14336561 53 + 24565398 AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCAGCUCACCCCGCGCC ((((((((......))))))))...((..(((((.......)))))..))... ( -18.60, z-score = -2.68, R) >consensus AACGGCUGAUUUUCCAGCUGUUGUUGCCAGGUGAUUUCCCCCGACCCCGCCAC ((((((((......))))))))............................... (-10.21 = -10.32 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:44 2011