| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,486,284 – 11,486,439 |
| Length | 155 |
| Max. P | 0.585089 |
| Location | 11,486,284 – 11,486,439 |
|---|---|
| Length | 155 |
| Sequences | 5 |
| Columns | 166 |
| Reading direction | reverse |
| Mean pairwise identity | 71.61 |
| Shannon entropy | 0.49768 |
| G+C content | 0.30195 |
| Mean single sequence MFE | -35.74 |
| Consensus MFE | -14.22 |
| Energy contribution | -16.98 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11486284 155 - 24543557 UUUAAUAUAAAUGAAAUUGUACAUUUCUAAGCAAUAAA----UUAUUUAAUAUGUACAAACAUGUAAAAUAAGUAGGCAAUUCAUUUUACUGCUUUGAGGA-UUUACAU-GCACAGGCAAGUGUGCUC-UGUUCAUACGUUGUACGUUUCAUAUAGAAAGUC---- ..........(((((((.(((((((((.(((((.....----((((((.((((((....)))))).))))))(((((........)))))))))).)))).-.....((-(.(((((((....))).)-))).)))....))))))))))))..........---- ( -33.70, z-score = -1.74, R) >droEre2.scaffold_4784 11496786 134 - 25762168 ---------------------------UCUACUUUAAAUUCGUUAUUUAAUGUGCACAAACAUGUAAAUUAAGUAUGCAAUUCAUUUUACUGCUUUGACGG-CUUACAUAGUCUAGCGUGCACUGUGUAUACAGACAUAUAUCACGAUGCAUAUAUAAUGGC---- ---------------------------............((((((((((((.((((......)))).)))))(((((((..((........(((..(((..-........))).)))(((...(((((......)))))...))))))))))))))))))).---- ( -25.20, z-score = 0.45, R) >droYak2.chr3L 11527351 160 - 24197627 UCUAAUGUAAAUGAAAUGGUAUAUUUCUUAGCCAUAAA----UUCUUUAAUAUGUACAAACAUGU-AAAUAAGUAUGCCAUUCAUUUUACUGCUUUGAGAAGCUUAAAUAGUAAAGGGUGCGGUGCAC-UGUGUAUACAUAGUACAUUUUAUAUAUGUAGAAUGGC .......((((.((((((((..........)))))...----)))))))((((((....))))))-..........(((((((.((((((((.((((((...)))))))))))))).(((..(((.((-((((....)))))).)))..))).......))))))) ( -35.20, z-score = -0.80, R) >droSec1.super_0 3694612 159 - 21120651 UUUAACAUAAAUGAAAUUGUACAUUUGUAAGCAAUAAAUUCUUUAUUUAAUAUGUACAAACAUGUAAAAUAAGUAGGCAAUUCAUUUUACUGAUUUGAGGG-CUUACGU-GCAUAGUCAAGCGUGCAC-UGUGCACACAUUGUACAUUUCAUAAAGAAAGGC---- ..........(((((((.(((((...((((((.........(((((((.((((((....)))))).)))))))....(((.(((......))).)))...)-)))))((-(((((((((....)).))-)))))))....))))))))))))..........---- ( -42.80, z-score = -3.75, R) >droSim1.chr3L 10881321 159 - 22553184 UUUAACAUAAAUGAAAUUGAACAUUUGUAAGCAAUAAAUUCUUUAUUUAAUAUGUACAAACAUGUAAAAUAAGUAGGCAAUUCAUUUUACUGAUUUGAGGG-CUUACGU-GCAUAGUCAAGCGUGCAC-UGUGCACACAUUGUACAUUUCAUAAAGAAUGGC---- ......(((((((........)))))))..((.....(((((((((.....(((((((...((((.......((((((..((((...........)))).)-)))))((-(((((((((....)).))-))))))))))))))))))...))))))))).))---- ( -41.80, z-score = -3.38, R) >consensus UUUAACAUAAAUGAAAUUGUACAUUUCUAAGCAAUAAAUUC_UUAUUUAAUAUGUACAAACAUGUAAAAUAAGUAGGCAAUUCAUUUUACUGCUUUGAGGG_CUUACAU_GCAUAGGCAAGCGUGCAC_UGUGCACACAUUGUACAUUUCAUAUAGAAAGGC____ ..........(((((((.((((........((..........((((((.((((((....)))))).))))))(((((...((((...........))))...)))))...))..........(((((....))))).....))))))))))).............. (-14.22 = -16.98 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:43 2011