| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,478,505 – 11,478,609 |
| Length | 104 |
| Max. P | 0.581187 |
| Location | 11,478,505 – 11,478,609 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 70.76 |
| Shannon entropy | 0.47517 |
| G+C content | 0.38440 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -11.79 |
| Energy contribution | -12.83 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11478505 104 + 24543557 GAAAAGUUAGUGCUGCUAGCUAUUUUGGGG--UGAGAAAUAAUAAUAAUACAGCCCUUAAGUUAUUACUUAACCCCA-------CUUCACGAAGUCAAGAAGCAUUAGGCUGG ....((((((((((.((.........((((--((((.((((((.................)))))).))).)))))(-------(((....))))..)).))))))).))).. ( -22.73, z-score = -0.42, R) >droEre2.scaffold_4784 11488736 98 + 25762168 -------------GAUAAGUUAGUAUGGGU--UGAGAAAUAAUAAUAGAAGAACCCUUACGUUACUUCGUAGCCCCAUUGGACCCAUCACGUAGUCGAGUAGCAUUACGUUGU -------------.........(.((((((--(.((......((...(((((((......))).)))).))......)).))))))))((((((((.....).)))))))... ( -19.70, z-score = -0.63, R) >droYak2.chr3L 11519232 99 + 24197627 -------------GAUAAGUUGGCAUGGGUG-UGAGAAAUAAUAAUAGUACAACCCUUACGUUACUUCUUAACCCCAUGGGACCCAUCACGUAGUCGAAUAGCAUUACGCUGU -------------(((..(((..((((((..-((((((.((((...((.......))...)))).))))))..)))))).)))..))).(((((((.....).)))))).... ( -23.10, z-score = -0.66, R) >droSec1.super_0 3687001 106 + 21120651 GAAAAGUUAGUGCUGCUAGCUAUUUUGGGGGGUGAGAAAUAAUAAUAAUACAACCCUUAAGUUAUUUCUUAACCCCA-------CAUCACGAAAUCAAGAAGCAUUACGCUGU ....((((((((((.((.(..((((((.(((((((((((((((.................)))))))))).))))).-------.....))))))).)).))))))).))).. ( -27.53, z-score = -2.67, R) >droSim1.chr3L 10873378 89 + 22553184 ---------GAAAAGUUAGCUAUUUUGGGGGGUGAGAAAUAAUAAUAAUACAACCCUUAAGUUAUUUCUUAACCCCA-------C--------AUCAAAAAGCAUUACGCUGU ---------.........(((.(((((((((((((((((((((.................)))))))))).))))).-------.--------.))))))))).......... ( -22.13, z-score = -2.77, R) >consensus _________G___GGUUAGCUAUUUUGGGGG_UGAGAAAUAAUAAUAAUACAACCCUUAAGUUAUUUCUUAACCCCA_______CAUCACGAAGUCAAGAAGCAUUACGCUGU .........................(((((...((((((((((.................))))))))))..))))).......................(((.....))).. (-11.79 = -12.83 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:42 2011