| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,862,539 – 4,862,699 |
| Length | 160 |
| Max. P | 0.734217 |
| Location | 4,862,539 – 4,862,699 |
|---|---|
| Length | 160 |
| Sequences | 4 |
| Columns | 184 |
| Reading direction | reverse |
| Mean pairwise identity | 72.10 |
| Shannon entropy | 0.46205 |
| G+C content | 0.30711 |
| Mean single sequence MFE | -38.23 |
| Consensus MFE | -21.80 |
| Energy contribution | -22.55 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4862539 160 - 23011544 CUUGACGCACUAGUUGACUUAAAUAUUAAAGUUAAUUGAGUUUGCAGAGUUUUGGCAUAGAAGCACGCAAAUGCUGGUGUGCAAAUUGAAAUUUGAAAUAAAACA---UCAAUAUUUCAUUCAAUUGAGUUGAGAGCAAAUGAAAAUAUAUGGCCAAAAUAAC--------------------- .(((.((.((((((((((((........))))))))).))).))))).((((((((......((((((........)))))).(((((((...(((((((.....---....))))))))))))))..........................))))))))...--------------------- ( -36.50, z-score = -1.73, R) >droEre2.scaffold_4929 4944152 177 - 26641161 CUU--CGCACUAGUUGGCUUAAAUAUUAAAGUUAAUUGAGUUUGCAGAGAUUUUGCAUAGAAGCAUGGAAAUGCUGGUGUGCAAAUUGAAAUUUAAAAAGUUAUAAAUUAAAAGUUAUUUUCCAUAGAGUUGAGAGAAAAUGGAAUUA-GUUUUUAGGUAAAUA----UAUAUGACCAAGCAAA ...--.((..((((((((((........)))))))))).((((((......((((((((..(((((....)))))..))))))))......................((((((..((..((((((....((....))..)))))).))-..)))))))))))).----...........))... ( -39.70, z-score = -2.35, R) >droYak2.chr2L 4872945 170 - 22324452 CUU--UGCACUAGUUGGCUUAAAUAUUAAAGUUAAUUGAGUUUGCAGAGAUUUGGCAUAGAAGCUUGGAAAUGCUGGUGUGCAAAUUGAAA-UUAAAAAGUUAU---------UUUUCAUUCAAUAGAGUUGAGAGAAUGUUGAAAUA-GUUUUUAUACAUAUACUCGUAUAUGACCAAAAUA- (((--(((((((((((((((........))))))))).)))..)))))).(((((.((((((((((((((((((......)))......((-((....))))..---------))))))(((((((...((....)).)))))))..)-)))))))).((((((....)))))).)))))...- ( -38.60, z-score = -1.75, R) >droSim1.chr2L 4733028 168 - 22036055 CUUGCCGCACUAGUUGGCUUAAAUUUUAAAGUUAAUUGAGUUUGCAGACUUUUGGCAAAGAAGCAUGGAAAUGCUGGUGUGCAAAUUGAUAUUUAAA-------A---CUUAUAUUUCAUUCAAUUGAGUUGGGAGCAAGUGCAAAUA-GUUGCCAAGUAAAUAUAUGGCCAAAAUACC----- ...(((((((((((((((((........)))))))))..((((.(((.(((...(((....(((((....)))))....))).((((((........-------.---............)))))))))))).)))).)))))..(((-.((((...)))).)))..))).........----- ( -38.10, z-score = 0.12, R) >consensus CUU__CGCACUAGUUGGCUUAAAUAUUAAAGUUAAUUGAGUUUGCAGAGAUUUGGCAUAGAAGCAUGGAAAUGCUGGUGUGCAAAUUGAAAUUUAAAAAGUUAUA___U_AAUAUUUCAUUCAAUAGAGUUGAGAGAAAAUGGAAAUA_GUUGCCAAAUAAAUA____UAUAUGACCAA_____ ......((((((((((((((........))))))))).)))..)).........(((((..(((((....)))))..)))))................................((((((((....))).)))))................................................. (-21.80 = -22.55 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:37 2011