| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,442,726 – 11,442,845 |
| Length | 119 |
| Max. P | 0.607319 |
| Location | 11,442,726 – 11,442,845 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.25 |
| Shannon entropy | 0.28412 |
| G+C content | 0.42863 |
| Mean single sequence MFE | -30.24 |
| Consensus MFE | -23.75 |
| Energy contribution | -25.28 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11442726 119 - 24543557 GUCUCUGGGACCGUAAGCAAAUACAUGUAAUCAUCAGGGUUGUCAACUCGUAUGACGUUGAAGUAAACGUAGCAUGCGAGCUUUGGUUUAACUUGAGACACAAUC-CAGGCAUUUCAGGA (((((..((((((.((((.......(((((((.....))))).))..((((((((((((......)))))..))))))))))))))))).....)))))....((-(..........))) ( -32.90, z-score = -1.42, R) >droSim1.chr3L 10835956 120 - 22553184 GUCUCUGGUACCGUAAGCAAAUACAUGUAAUCAUCAGGGUUGUCAACUCGUAUGACGUUGAAGUAAACUUAGCAUGCGAGCUUUGGUUUAACUUGAGACACAAUCGCAGCCAUUUCAGGA (((((.(((((((.((((.......(((((((.....))))).))..(((((((..(((......)))....)))))))))))))))...))).)))))..........((......)). ( -29.70, z-score = -0.61, R) >droSec1.super_0 3651202 119 - 21120651 GUCUCUGGUACCAUAAGCAAAUACAUGUAAUCAUCAGGGUUGUCAACUCGCAUGACGUUGAAGUAAACGUAGCAUGCGAGCUUUGGUUUAACUUGAGACACAAUC-CAGCCAUUUAAGGA (((((.(((((((.((((.......(((((((.....))))).))..((((((((((((......)))))..)))))))))))))))...))).)))))......-...((......)). ( -35.20, z-score = -2.65, R) >droYak2.chr3L 11482028 119 - 24197627 GUCUCUGAGGCCAUAAGCAAAUACAUGUAAUCAUCGGGGUUGUCAAUUCGUAUGACGUUGAGGUAAACGUAACAUGCGAGCUUUGCUUUAACUAGAGACACAAUC-CAGUCAGUUAAGGA (((((((((((...((((.......(((((((.....))))).))..((((((((((((......)))))..))))))))))).)))))....))))))....((-(..........))) ( -31.60, z-score = -1.54, R) >droEre2.scaffold_4784 11449363 93 - 25762168 GUCUCUGAGACCGUAAGCAAAUACAUGUAAUCAUCAGGGUUGUCAA--------------------------CAUGCGAGCUUUGGUUUAACUAGAGGCACAAUC-CAGACAGUUAGGGA (((((((((((((.((((.....(((((...((.......))...)--------------------------))))...))))))))))...)))))))....((-(.........))). ( -21.80, z-score = -0.49, R) >consensus GUCUCUGGGACCGUAAGCAAAUACAUGUAAUCAUCAGGGUUGUCAACUCGUAUGACGUUGAAGUAAACGUAGCAUGCGAGCUUUGGUUUAACUUGAGACACAAUC_CAGCCAUUUAAGGA (((((..((((((.((((.......(((((((.....))))).))..((((((((((((......)))))..))))))))))))))))).....)))))..................... (-23.75 = -25.28 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:40 2011