| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,427,153 – 11,427,273 |
| Length | 120 |
| Max. P | 0.886511 |
| Location | 11,427,153 – 11,427,273 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.15256 |
| G+C content | 0.38130 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.886511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11427153 120 - 24543557 GCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAAUCACUCAUUUGUGUUUUCUUAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAUAACUAAA .....(((((((((((....)))))..))))))...(((......))).........((.((..(((.((....))...)))..)).))((((((.(((........))).))))))... ( -28.60, z-score = -1.72, R) >droSim1.chr3L 10821782 120 - 22553184 GCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCAGUCUUUUGUGUUUUCUAAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAUAACUAAA .....(((((((((((....)))))..))))))....(((..(((((......(((.((((..((((..(((........)))....)))).....)))).)))...)))))..)))... ( -29.30, z-score = -1.88, R) >droSec1.super_0 3635995 120 - 21120651 GCAAAGGCAGAUGGGUAACAGCCCAAUUCUGUCAUUCACUCGUUUGUGUUUUCUAAAGGCGGUCUAGUUGUAAACAUUUAUAUUCUUCCAGUUGUAUGUCAUUAUUAGCAAAUAACUAAA ((...(((((((((((....)))))..))))))...(((......)))..........))((...((.(((((....)))))..)).))((((((.(((........))).))))))... ( -26.90, z-score = -2.05, R) >droYak2.chr3L 11466544 120 - 24197627 GCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCAGUCGUUUGUGUUCUCUAAAGGCGGUCUUGUUGUGUACAUUUCUAUUCUUCUGGUUGUAUGCUAUUAUUGGCAAAUAACUAAA ((((.(((((((((((....)))))..))))))....((((((((...........)))))).))..)))).................(((((((.(((((....))))).))))))).. ( -30.80, z-score = -2.18, R) >droEre2.scaffold_4784 11433818 118 - 25762168 GCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCA-UCGUUUGUGUUUUCUAAAGGAUGCCU-GUUGUAAACAUUUCUAUUCUGCUGGUUGUAUGCCUUUAUUGGCAAAUAACUAAG (((..(((((((((((....)))))..)))))).....-..(...((((((.(...(((...)))-...).))))))..).....)))(((((((.((((......)))).))))))).. ( -35.10, z-score = -3.09, R) >consensus GCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCACUCGUUUGUGUUUUCUAAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAUAACUAAA .....(((((((((((....)))))..))))))............((((((.(...((.....))....).))))))............((((((.(((........))).))))))... (-24.74 = -24.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:39 2011