| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,414,531 – 11,414,621 |
| Length | 90 |
| Max. P | 0.971930 |
| Location | 11,414,531 – 11,414,621 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Shannon entropy | 0.39998 |
| G+C content | 0.35083 |
| Mean single sequence MFE | -15.39 |
| Consensus MFE | -9.45 |
| Energy contribution | -10.17 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11414531 90 + 24543557 -------AUAAUUUAUAACAGAUCUAGGCUUUGCUUUUUACAAAACUUUUU----AGCAUUGCCACCUUCCGCACCGACCACUGGAAUUCAAAUUUCCAGA -------...................(((..((((................----))))..))).................((((((.......)))))). ( -17.49, z-score = -3.37, R) >droEre2.scaffold_4784 11420602 85 + 25762168 AUAACUUAUAAUUC-CCACAGAUCUAGGCUUGGCGUUUUACAAACUUUUUUU--AUUCAUUGCC-------------GCCACUGGAAUUCAAAUUUCUCGA ..............-.......(((((...(((((.................--......))))-------------)...)))))............... ( -9.80, z-score = 0.08, R) >droYak2.chr3L 11451763 100 + 24197627 AUAACUUAUAAUUC-CCACAGAUCUAGGCUUAGUUCUUUACAAACUUUUUUUGUAUUCAUUGCCUCCUUUUGCGCCGACCACUGGAAUUCAAAUUUCUAGA ..............-.(.((((...((((.........((((((.....))))))......))))...)))).).......((((((.......)))))). ( -14.76, z-score = -1.40, R) >droSec1.super_0 3623660 84 + 21120651 AUAACUUAUAAUUC-CAACAGAUAUAGGCUUUGCUUUUUACCAAACUUUUUU---AGCAUUGCCACC-------------ACUGGAAUUAAAAUUUCCAGA ..............-...........(((..((((.................---))))..)))...-------------.((((((.......)))))). ( -17.43, z-score = -3.83, R) >droSim1.chr3L 10808884 96 + 22553184 AUAACUUAUAAUUC-CAACAGAUCUAGGCUUUGCUUUUUACAAAACUUUUU----AGCAUUGCCACCUUCCUCGCCGACCACUGGAAUUCAAAUUUCCAGA ..............-...........(((..((((................----))))..))).................((((((.......)))))). ( -17.49, z-score = -3.05, R) >consensus AUAACUUAUAAUUC_CAACAGAUCUAGGCUUUGCUUUUUACAAAACUUUUUU___AGCAUUGCCACCUU___C_CCGACCACUGGAAUUCAAAUUUCCAGA ..........................(((..((((....................))))..))).................((((((.......)))))). ( -9.45 = -10.17 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:32 2011