| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,394,766 – 11,394,874 |
| Length | 108 |
| Max. P | 0.885742 |
| Location | 11,394,766 – 11,394,874 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.03 |
| Shannon entropy | 0.31273 |
| G+C content | 0.28931 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -12.07 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11394766 108 - 24543557 CAUGGCCAAGGCACUUAUUUAAGGUGCUUUUAACUUUCAAAGGAAAAAGCUUUGCCAUCAACGUUC--GUAUAUUUUGAACUUUAU------UUAUAUAUUCUUUCAUGAAUUGAA---- ..((((.(((((((((.....)))))).......((((....))))...))).))))((((.((((--(.......))))).....------.......(((......))))))).---- ( -20.50, z-score = -1.33, R) >droSec1.super_0 3603738 108 - 21120651 CAUGGCCAAGGCACUUAUUUAAGGUGCUUUUAACUUUCAAAAGCAAAAGCUUUGCCAUCUACGUUC--AUAUAUUUUGAACUUUAU------UUUUAUAUUCUAUCAUGAAUUGAA---- .(((((.(((((((((.....))))))))).........(((((....))))))))))....((((--(.......))))).....------.((((.((((......))))))))---- ( -23.80, z-score = -2.78, R) >droYak2.chr3L 11431097 116 - 24197627 CAUGGCCAAGGCACUUAUUUAAGGUGCUUUUAACUUACAAAAGAAAUGGCUUUUUCAUCUAGGUUCAUAUAUAUGUUGAACUAUAUAAAUAGAAAUAUAUUCUUUAAUGAAAUGAA---- ...(((((((((((((.....))))))))....(((....)))...))))).((((((...((((((.........))))))......(((....)))........))))))....---- ( -22.40, z-score = -1.65, R) >droEre2.scaffold_4784 11400839 118 - 25762168 CAUGGCCAAGGCACUUACUUAAGGUGCUUUUAACUUUCAAAAGAAAGAGCUUUUCCAUCUAGGUAC--AUAUAUUUGUAACCAUAUACAAAUAUAUGUACUAUAUCUUAAAUUAAAUGAA .((((..(((((((((.....)))))))))...(((((....))))).......))))...(((((--(((((((((((......))))))))))))))))................... ( -33.50, z-score = -5.54, R) >consensus CAUGGCCAAGGCACUUAUUUAAGGUGCUUUUAACUUUCAAAAGAAAAAGCUUUGCCAUCUACGUUC__AUAUAUUUUGAACUAUAU______AUAUAUAUUCUAUCAUGAAUUGAA____ .(((((.(((((((((.....))))))))).........((((......))))))))).............................................................. (-12.07 = -12.20 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:31 2011