| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,391,687 – 11,391,787 |
| Length | 100 |
| Max. P | 0.633015 |
| Location | 11,391,687 – 11,391,787 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Shannon entropy | 0.59245 |
| G+C content | 0.57748 |
| Mean single sequence MFE | -31.39 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.73 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11391687 100 - 24543557 -------CGGCGGGUUAGACGAGGUGAGUUGUGCCGAACUGUGUUGAGUUGGGCGGAG--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------.(((.((.....(((.(((.(((.((((.((((......)))).)))).))--)(....)....(((.....)))..))).))).((....)).)).))).. ( -35.40, z-score = -1.98, R) >droSim1.chr3L 10783802 100 - 22553184 -------CGGUGGGUUAGACGAGGUGAGUUGUGCCGAACUGUGUUGAGUUGGGCGGAG--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------.(((.((.....(((.(((.(((.((((.((((......)))).)))).))--)(....)....(((.....)))..))).))).((....)).)).))).. ( -34.10, z-score = -1.92, R) >droSec1.super_0 3600773 100 - 21120651 -------CGGUGGGUUAGACGAGGUGAGUUGUGCCGAACUGUGUUGAGUUGGGCGGAG--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------.(((.((.....(((.(((.(((.((((.((((......)))).)))).))--)(....)....(((.....)))..))).))).((....)).)).))).. ( -34.10, z-score = -1.92, R) >droYak2.chr3L 11428040 100 - 24197627 -------UGGUGGCUUAGAUGAGGUGAGUUGUGCCGAACUGUGUUGAGUUGGGCGGAG--CGGAAAUGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------..((((((..(((((.(((.(((.((((.((((......)))).)))).))--)..........(((.....)))..))).))..((....))))))))))) ( -32.90, z-score = -1.95, R) >droEre2.scaffold_4784 11396187 100 - 25762168 -------UGGUGGGUUAGAUGAGGUGAGUUGUGCCGAGCUGUGUUGAGUUGGGCGGAG--CGGAAACGAGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------((((.((.....(((.(((.(((.((((.((((......)))).)))).))--)(....)....(((.....)))..))).))).((....)).)).)))). ( -32.30, z-score = -1.82, R) >dp4.chrXR_group6 3006140 84 + 13314419 -------UGUGGGGUUAGACGAGGUGAGC--------------UUGGGCUGAGCG--C--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------............((((.....)--------------)))((((((((.--(--((....)))..)).(((((.....)))))...((....)).)))))).. ( -28.20, z-score = -1.32, R) >droPer1.super_20 1613099 84 + 1872136 -------UGUGGGGUUAGACGAGGUGAGC--------------UUGGGCUGAGCG--C--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU -------............((((.....)--------------)))((((((((.--(--((....)))..)).(((((.....)))))...((....)).)))))).. ( -28.20, z-score = -1.32, R) >droWil1.scaffold_180698 1814354 109 - 11422946 UGGAGCGUUAGGCGGGACGCCAUGUAAGUCGGUGAGUUGGCGGUUAGGUGGUGCGCAAAGCGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU (((.(((((..(((...((((((.(((.(((.(.....).)))))).)))))))))..)))(....)....)).(((((.....)))))(((((....)).))).))). ( -32.60, z-score = 0.20, R) >droGri2.scaffold_15110 14113467 88 - 24565398 ---------------AAUGCCCGGUGGG-CGGUGGGUGGGUGAU---GUGUGUCGCAA--CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU ---------------..(((((...)))-))((((.(((.((((---((((..((((.--((....))(......).))))..)))))))).((....)).))).)))) ( -29.00, z-score = -0.02, R) >droMoj3.scaffold_6680 6612726 89 + 24764193 ------------------CCGUGGGGGCGUGGGGGCUUGGCCAACGUGUAUGGCACAA--CGGAAACGGCAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU ------------------..((..(.(((((...(((..(((...(((.....)))..--.(....)))))))..))))).).))..(((((((....)).)))))... ( -30.80, z-score = -0.11, R) >droVir3.scaffold_13049 1695914 80 + 25233164 ---------------------CAGUGGG-CGGAAAGGGGGC--U---GUGGGGCACAA--CGGAAACGGGACCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU ---------------------..((((.-(((......(((--.---(((..(((((.--((....))(......).)))))..))))))..((....)).))).)))) ( -27.70, z-score = -2.04, R) >consensus _______UGGUGGGUUAGACGAGGUGAGUUGUGCCGAACUGUGUUGAGUUGGGCGGAG__CGGAAACGGGAGCAACAUGUGCAACAUGUCGAACGGAAGUGUCGGCCAU ......................(((...................................((....))......(((((.....)))))(((((....)).)))))).. (-13.54 = -13.73 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:30 2011