| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,858,770 – 4,858,866 |
| Length | 96 |
| Max. P | 0.547768 |
| Location | 4,858,770 – 4,858,866 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Shannon entropy | 0.32684 |
| G+C content | 0.50963 |
| Mean single sequence MFE | -28.46 |
| Consensus MFE | -21.04 |
| Energy contribution | -20.60 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4858770 96 + 23011544 -UCGACGAACCGAACGGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUCGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGAACCGAAG-------- -(((.((((((((((((.((((((((.....).))))))).((((((((.....))))))))......)))))))).........))))...)))..-------- ( -27.30, z-score = -0.44, R) >droSim1.chr2L 4729339 97 + 22036055 UCCGACGAACCGAACGGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUCGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACCGAAG-------- (((((....((((((((.((((((((.....).))))))).((((((((.....))))))))......))))))))((....))..)))))......-------- ( -29.60, z-score = -0.81, R) >droSec1.super_5 2954206 97 + 5866729 UCCGACGAACCGAACGGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUCGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACCGAAG-------- (((((....((((((((.((((((((.....).))))))).((((((((.....))))))))......))))))))((....))..)))))......-------- ( -29.60, z-score = -0.81, R) >droYak2.chr2L 4869050 95 + 22324452 -UCGACGAACC-AUCAACGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACCGGAG-------- -.((((((...-....((....))..)))))).........((((((((.....)))))))).....(((((((((.(((...)))))))).)))).-------- ( -27.00, z-score = -1.06, R) >droEre2.scaffold_4929 4940267 95 + 26641161 -UCGACGAACC-AUCAGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACCGGAG-------- -.((((((...-....((....))..)))))).........((((((((.....)))))))).....(((((((((.(((...)))))))).)))).-------- ( -27.30, z-score = -0.81, R) >droAna3.scaffold_12943 2598130 94 + 5039921 --CGACGAACC-AUCAGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGGCCAGAC-------- --((((((...-....((....))..)))))).........((((((((.....))))))))........(((((((.((........)))))))))-------- ( -29.10, z-score = -1.48, R) >dp4.chr4_group3 6102938 97 - 11692001 -CCGACCAACC-AUCAGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUAAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACUCGGUUU------ -((((((..((-(..(((((((((((.....))........((((((((.....))))))))..))))))))))))((....))....))..))))...------ ( -27.80, z-score = -1.86, R) >droPer1.super_1 3201574 97 - 10282868 -CCGACCAACC-AUCAACGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUAAAAGUGCGCACAUCUCCGUUUGGCAUCAAUGAUUCGGACUCGGUUU------ -((((((..((-(..((((((.(.((.....))).......((((((((.....)))))))).....)))))))))((....))....))..))))...------ ( -25.40, z-score = -1.42, R) >droWil1.scaffold_180772 7198765 100 - 8906247 --CUGCCCAGCCAUCAACGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUAAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGCCCACGUCCUGAC--- --.......((((..(((((((((((.....))........((((((((.....))))))))..))))))))))))).(((..(((........))).))).--- ( -28.10, z-score = -2.30, R) >droMoj3.scaffold_6500 26370895 95 + 32352404 ----------CCAUCAACGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUGAAAGUGUGCACAUUUCCGUUUGGCAUCAAUGAUUCGCCCACUGCCCGCAGGA ----------.....(((((((((((.....))........((((((..((....)).))))))))))))))).(((...........)))..(((....))).. ( -24.60, z-score = -0.48, R) >droGri2.scaffold_15126 4690875 102 - 8399593 -UCGGUGGGGCCAUCAACGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUCGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGCCCACUGCCCACGG-- -.(((((((((((..(((((((((((.....))........((((((((.....))))))))..)))))))))))))(((...)))...))))))).......-- ( -37.30, z-score = -2.60, R) >consensus _CCGACGAACC_AUCAGCGGAAGUGCUCGUCGCCAUUUUUAGUGCACUUCUUGAAAGUGCGCACAUUUCCGUUUGGCAUCAAUGAUUCGGACCCGAG________ ...............(((((((((((.....))........((((((((.....))))))))..)))))))))................................ (-21.04 = -20.60 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:36 2011