| Sequence ID | dm3.chr2L |
|---|---|
| Location | 533,374 – 533,478 |
| Length | 104 |
| Max. P | 0.655935 |
| Location | 533,374 – 533,478 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 59.51 |
| Shannon entropy | 0.83896 |
| G+C content | 0.55955 |
| Mean single sequence MFE | -25.25 |
| Consensus MFE | -6.89 |
| Energy contribution | -7.17 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 533374 104 + 23011544 ---AACACUAUAAAUACGCCCGCGUACCUAGCUGCAUCCAGCGACCUCUAUGUGCUGACCCAGCCAGACGCACUGGCGACUUGCUCCCGAGAUCCUAGGCACCUUUG ---..............(((.((((..((.((((....((((.((......))))))...)))).))))))..(((.((((((....)))).))))))))....... ( -24.90, z-score = -1.11, R) >droYak2.chr2L 520467 93 + 22324452 --------------AGCACUCUUAAAUCUACUUGCAUUCAGCGACCUCCAAGUGCUGACCCAGCCAGACGCACUGGCGACUUGCUGCCGCGAUCCUAGGCACCUUCG --------------((((.((................(((((.((......)))))))....(((((.....)))))))..))))(((.........)))....... ( -22.20, z-score = -0.25, R) >droEre2.scaffold_4929 588393 104 + 26641161 ---AUGGUUACCCACUUACCCACGUACUCACUUGCAUCCAACGAACUCUAAGUAGUGACCCAGCCAGACGCACUGGCGACUGGCUCCCGAGAUCCUAGGCAGCCUUG ---..((((((..(((((....(((...............))).....))))).))))))..(((((.....)))))....((((.((.........)).))))... ( -25.66, z-score = -0.70, R) >droAna3.scaffold_12943 344917 85 - 5039921 ---CUCAUUACGCAUACGCCCGCA---------GUGCCGCAUGAACUCCAUGUGCUCAUCCCGCCAGACGUUCUGGCGACC----------AUCCUAGACACUUUCC ---........((........))(---------(((.((((((.....)))))).......((((((.....))))))...----------........)))).... ( -20.90, z-score = -1.79, R) >droWil1.scaffold_180772 6098801 102 - 8906247 GAGACUACCAAAGAAAAAAUGCCAGACAAACUGGCGUC--GUCAUCGGCAUAUCUAGGAGCAUCCACUCGCUCUGGUGUCUCUGGUAUGCCACCGCCAACACCA--- (((((.(((..(((......(((((.....)))))(((--(....))))...))).(((((........)))))))))))))((((........))))......--- ( -34.00, z-score = -3.31, R) >droSim1.chr2L 542306 104 + 22036055 ---AGCACUACUAAUACGCCCACGUACUUAGUUGCAUCCAGCGACCUCUAAGUGCUGACCCAGCCAGACGCACUGGCGACUUGCUCCCGAGAUCCUAGGCACCUUUG ---..............(((((.((((((((((((.....)))))...))))))))).....(((((.....)))))((((((....)))).))...)))....... ( -27.10, z-score = -1.51, R) >droSec1.super_14 516012 88 + 2068291 ---AGCACUACUAAUACGCC----------------UUCAGCGACCUCUAAGUGCUGACCCAGCCAGACGCACUGGCGACUUGCUCCCGAGAUCCUAGGCACCUUUG ---..............(((----------------((((((.((......)))))))....(((((.....)))))((((((....)))).))..))))....... ( -22.00, z-score = -1.13, R) >consensus ___AGCACUACAAAUACGCCCACAUAC_UACUUGCAUCCAGCGACCUCUAAGUGCUGACCCAGCCAGACGCACUGGCGACUUGCUCCCGAGAUCCUAGGCACCUUUG ..............................................................(((((.....))))).............................. ( -6.89 = -7.17 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:05 2011