| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,386,051 – 11,386,102 |
| Length | 51 |
| Max. P | 0.960392 |
| Location | 11,386,051 – 11,386,102 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 95.06 |
| Shannon entropy | 0.06802 |
| G+C content | 0.33987 |
| Mean single sequence MFE | -10.23 |
| Consensus MFE | -9.80 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11386051 51 - 24543557 ---AAAGAACUUGGAUUUGAGGUGCAUAUCAAAUAAGGUUCAGUACCAAGAAUG ---...((((((..((((((........)))))).))))))............. ( -11.10, z-score = -2.08, R) >droSim1.chr3L 10778158 54 - 22553184 AAAAAAGAACUAGGAUUUGAGGUGCAUAUCAAAUAAGGUUCAGUACCAAGAAUG ......(((((...((((((........))))))..)))))............. ( -9.80, z-score = -2.03, R) >droSec1.super_0 3595230 54 - 21120651 AAAAAAGAACUAGGAUUUGAGGUGCAUAUCAAAUAAGGUUCAGUACCAAGAAUG ......(((((...((((((........))))))..)))))............. ( -9.80, z-score = -2.03, R) >consensus AAAAAAGAACUAGGAUUUGAGGUGCAUAUCAAAUAAGGUUCAGUACCAAGAAUG ......(((((...((((((........))))))..)))))............. ( -9.80 = -9.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:29 2011