| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,364,297 – 11,364,401 |
| Length | 104 |
| Max. P | 0.735308 |
| Location | 11,364,297 – 11,364,401 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.63 |
| Shannon entropy | 0.29952 |
| G+C content | 0.57972 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -16.84 |
| Energy contribution | -16.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11364297 104 + 24543557 AUGGACCUCCUUCUUUGCCCUCCGGCGAAUCAUUUGCAGAAACUCCUGGAACUCCGGGAAACCGUAGCUCCUGUCCUCCACUAUCCUGACUAUCCUGUCCGUCC ..((((.......((((((....))))))......((((........(((.((.(((....))).)).))).(((............)))....))))..)))) ( -25.70, z-score = -1.85, R) >droSim1.chr3L 10755181 101 + 22553184 AUGGACCUCCUUC---GCCCUCCGGCGAAUCAUUUGCAGAAACUCCUGGAACUCCGGGAAGCCGCAGCUCCUGUCCUCCACUAUCCUGACUAUCCUAUCCGUCC ..((((....(((---(((....))))))....((((.(....((((((....))))))..).)))).....))))...........(((..........))). ( -25.80, z-score = -1.42, R) >droSec1.super_0 3573606 101 + 21120651 AUGGACCUCCUUC---GCCCUCCGGCGAAUCAUUUGCAGAAACUCCUGGAACUCCGGGAGCUUGCAGCUCCUGUCCUCCACUAUCCUGACUAUCCUAUCCGUCC ..((((....(((---(((....))))))....((((((...(((((((....))))))).)))))).....))))...........(((..........))). ( -30.20, z-score = -2.95, R) >droEre2.scaffold_4784 11368623 87 + 25762168 AUGCACCUCCUCC---GCCCUCCGGCGUGGCAUUUGCAGAACCUCCUGGAUCUCCUGGAACCAGGAGCUCCAGUCCU-----GUCCUGUCCGUCC--------- .((((....(..(---(((....))))..)....))))((.....(((((.((((((....)))))).)))))....-----.))..........--------- ( -30.60, z-score = -2.33, R) >consensus AUGGACCUCCUUC___GCCCUCCGGCGAAUCAUUUGCAGAAACUCCUGGAACUCCGGGAACCCGCAGCUCCUGUCCUCCACUAUCCUGACUAUCCUAUCCGUCC ..((((..........(((....))).....................(((.((.(((....))).)).))).))))............................ (-16.84 = -16.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:29 2011