| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,344,693 – 11,344,794 |
| Length | 101 |
| Max. P | 0.884529 |
| Location | 11,344,693 – 11,344,794 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 94.63 |
| Shannon entropy | 0.09353 |
| G+C content | 0.33869 |
| Mean single sequence MFE | -18.98 |
| Consensus MFE | -16.56 |
| Energy contribution | -17.24 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11344693 101 - 24543557 UUCCGAAAUUGUUUACUUAUUUUUGAAUGCCCCUCGGCCAAGGAAUUUGUUUGCUGUCGAUAACCUACGACGCGAUAUGUAAACACAUUCAAU--AAAUAUUC ....(((..(((((((...((((((...(((....)))))))))......((((.((((........))))))))...)))))))..)))...--........ ( -20.70, z-score = -2.01, R) >droEre2.scaffold_4784 11348797 99 - 25762168 UUCAGAAAUUGUUUACUUAUUUUUGAAUGCCCCUCGGCCAAAGAAUUUGUUUGCUGUCGAUAACCUACGA--CGAUAUGUACACACAUUCAAC--AAAUAUUC (((((((((.........))))))))).(((....)))....((((.(((.((((((((...........--))))).))).))).))))...--........ ( -18.20, z-score = -1.92, R) >droYak2.chr3L 11378857 99 - 24197627 UUCAGGAAUUGUUUACUUAUUUUUGAAUGCCCCUCGGCCAAAGAAUUUGUUUGCUGUCGAUAACCUACGA--CGAUAUGUAAACACAUUCAAU--AAAUAUUC (((((((((.........))))))))).(((....)))....((((.((((((((((((...........--))))).))))))).))))...--........ ( -21.30, z-score = -2.62, R) >droSec1.super_0 3554152 99 - 21120651 UUCAGAAAUUGUUUACUUAUUUUUAAAUGCCCCUCGGCCAAAGAAUUUGUUUGCUGUCGAUAACCUACGA--CGAUAUGUAAACACAUUCAAU--AAAUAUUC .........((((((.............(((....)))....((((.((((((((((((...........--))))).))))))).))))..)--)))))... ( -18.50, z-score = -2.48, R) >droSim1.chr3L 10734410 101 - 22553184 UUCAGAAAUUGUUUACUUAUUUUUAAAUGCCCCUCUGCCAAAGAAUUUGUUUGCUGUCGAUAACCUACGG--UGAUAUGUAAACACAUUCAAUAAAAAUAUUC .................((((((((...((......))....((((.(((((((((((....(((...))--))))).))))))).))))..))))))))... ( -16.20, z-score = -1.55, R) >consensus UUCAGAAAUUGUUUACUUAUUUUUGAAUGCCCCUCGGCCAAAGAAUUUGUUUGCUGUCGAUAACCUACGA__CGAUAUGUAAACACAUUCAAU__AAAUAUUC (((((((((.........))))))))).(((....)))....((((.((((((((((((.............))))).))))))).))))............. (-16.56 = -17.24 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:22 2011